G393116


Basic Information

Item Value
gene id G393116
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6877171 ~ 6881526 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU466182
GACTGCGCTACCATTCTGCTGATGGACAGGGGGTCTACAGGACGATCTGCCGCTTCATAGAAGTACATCACGGATGTCAGCTTATTCAAAAGGCATTCAGcacaTGTAAAGAAGCAGAAGAGAGAACAAGCCATGTTCATACCCTCCTGCTCCAGCCCTTACATTGATTCATCGTATATTTTACCTAAGTATGCAAACATCCTCCTGtccatcttggtgccagatacaacagcacaccttcagaggtcttgctgagtccatgcctcgatgggtcagagctgttttggtggcacaagggagacctacacaatattaggcaggtggttttaatgttatggctgatcggtgtgtgtgtgtgtgtatgtatatatacacagattaTTCAGTTACTGGTTCAAATGAAACAACAGCACACCCTATTGGAACGacagtatttaaataaaactgtcttTCTATAGCAAGCACTCACatacactataataataataataataataataataataataagccatTTATTTCATACTACTTAACACATCCTTTTGCACTGCTCTGTAATGTATATAGTCATCcacacactttaatatcacCACTTGCACTACATTGTATGTTTCATACCACactaaataatttgtaatttgtttgtgGACTGATTCTCAGCTCAGCCATAACACTGAGGTGTTAAAAATCTTAGATTCACTTGTACCGGTGCCACACACACTAAAATTCCaccaccatgtcagtgtcactgctgtgtgaAGAAAGGTCCATCCAAATAATATCTTGTCAGCATTCGTCCTATGGTGGTCCTTTTCCACTGGTGGACAGGTAGAAGGTGGGTGACAAATATTACAGAGCAACAGATAAGTTACAGTCATTAATTGCAAAGCACACCGTGTATATCTGTAAAATGGCTCATGAGTATAAGTACAAAGTAAGTGTTAAGATTAAGATGAGATAAAGCTGGTAGTAAAATAGTACTATAGATTAGTGCATTTAATGTGTAGTACCCTTTTAATCTAGACTCTCTACTCTCTCAAAACAATTTGTTGCTGGTAGCTTTTACTCTTGTCTGACTgcactaaacattttaaagcattgTAGGTGTGGAAGTACTCTAAATAGAAAATAGTCCAcctgaaaaaatattattgattGACTTACTGAATCTTGTTAGGAAATTACCATGCTGGTTCTTGCAATTGCAAAATGTATTACTATCATGCTTATCTGTGAGCTTTAAGGAGCTCAGCTTTAAATTGCTTTAATCATATTGTTTCTTTAATCTCTTAATCTTTACTACTTGATATCATATGAATGTGCTCCTTAATGTCTGAAATGAATAGAGATTGTTAGTTGGGCATTCATAAACATGTGCATGTTTCTTTGTATGGATATCTATGAACTTATATTAACTGTAGTAGCATGTTTAATCTATAAATCTggttatatttacttttatgttactgaatgtgtttattttattacttcttgAAAaaactgtctatctatctatctatctcagtAAAAGATATGCTTAGCAAGTTACATTACTTAACTGAGGCCTGGAAGAATTCACATTTCTCCACTTTGATAcatgatttttatattcttGATCAGAGGATAAGAAGATCATAAAGTCATATACAATGCCAAAATGGTTAACGAATTCACAAAAGCCTGGATGAGGGAAGGGGCACTGACCAGACCATGGAACATTGCCATGCATTTGTAGTGCCTGAAAGTAGTAATGAAGGCTGTCACTCATCCCTCTGTGACATGTTATAATTATATTCACCTCCTATGTCTAACTTTGCAAAGTTAGCTCTTCTCAACTGTTTAAAACCTGATGGAACAATAGGTCATGGATACCTGTACTTCACTGTTACTGCAGTCAAGTCTCAGCATGTTTCTCTCCTTTGTTCCGCAAAGAAGAGCCCTGCAGCTTCAGGAGAGATGAATGTAGGCCATTCCTAATACTAATCTCCCCTAATACTCAGGTGAGAGTGACCTCTGCTGACTAGAAGGTGTAATATCCCAGGCTGATGAgacatgcttttatttgtttaggtTGTTTATCCTGTCCATTTAATTGTGTTGTCATTTCCCTTTTATGTCACAGCCTGATGATAAATCATCTTGTAACACTGAGTTATAACAGtgattcatttcctgttcaCAAAGTATAGCTATTGATTTCTAGGTTACATTACTGGTTTTACACCTGAGATAgaagctgtagtgtgtgtacagtacaggTGCAGTTAAACAACTTACGGAAGAAAGTGGTGTATTATCTAATGATGTATTACACAATATATAATGATTTCTATTGAGATGTCTGAGCAACATTAAAAAATTGTGtctttgattaaataaaaaaaaaccagcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU466182 True 2392 lncRNA 0.36 2 6877171 6881526

Neighbor

gene id symbol gene type direction distance location
supt16h supt16h coding upstream 100827 6762469 ~ 6776344 (+)
tox4b tox4 coding upstream 117267 6746669 ~ 6759904 (+)
nop10 NA coding upstream 131917 6720845 ~ 6745254 (+)
LOC113544316 slc12a6 coding upstream 131921 6721795 ~ 6745250 (+)
lpcat4 lpcat4 coding upstream 166416 6699072 ~ 6710755 (+)
sb:cb1081 NA coding downstream 45034 6926560 ~ 6937373 (+)
zgc:92594 LOC108260947 coding downstream 58181 6939707 ~ 6946723 (+)
casq1b LOC108260939,LOC108442777,LOC106577953,LOC100194596,LOC107726186 coding downstream 118679 7000205 ~ 7032730 (+)
LOC113544234 LOC108260940 coding downstream 152753 7034279 ~ 7041912 (+)
LOC113544270 LOC108260482 coding downstream 420113 7301639 ~ 7306530 (+)
LOC117596334 NA non-coding upstream 14348 6854655 ~ 6862823 (+)
G393124 NA non-coding upstream 56432 6818303 ~ 6820739 (+)
LOC113544411 NA non-coding upstream 97234 6777336 ~ 6779937 (+)
G393113 NA non-coding upstream 131927 6720882 ~ 6745244 (+)
G393056 NA non-coding upstream 212122 6663754 ~ 6665049 (+)
G393150 NA non-coding downstream 63293 6944819 ~ 6949308 (+)
G393293 NA non-coding downstream 173802 7055328 ~ 7061670 (+)
G393301 NA non-coding downstream 204271 7085797 ~ 7086015 (+)
LOC113544421 NA non-coding downstream 251570 7133096 ~ 7151569 (+)
LOC117596340 NA non-coding downstream 273851 7155377 ~ 7163031 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 258489 6614859 ~ 6618682 (+)
lrba lrba other upstream 638093 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 966579 5831544 ~ 5910592 (+)
LOC113545745 ptprd other upstream 2020197 4463898 ~ 4856974 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other upstream 3476346 3359377 ~ 3400825 (+)
LOC117596330 NA other downstream 15467 6896993 ~ 6900940 (+)
G393467 slit1 other downstream 546092 7427618 ~ 7430910 (+)
G394251 NA other downstream 1377402 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 2254431 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 3066215 9947741 ~ 10050101 (+)

Expression


Co-expression Network