G393293


Basic Information

Item Value
gene id G393293
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7055328 ~ 7061670 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU466402
TGACGCAGAGGAAGACGTGCGCGAGACCCGTGGCCTCAAGTTCAGTCTATGTTTTCACTCCAAGATGTCAAAAAGAATAGTTTCATAATGCGATACATGTTGTGTGCCCCAAAACGAACTCCAACCTGAAAAAACACGTAGCGACACCACATTTGTGCCTCCTTGCACACAGAGACTGCAGATTAACTTTCCCTCGCTGACTGAATAGAGCTCCAGAGGCCTGCCGTGGACCATGCACGCCCGCTGATCCAGTTCATTCAGAGGGCAGATGTCGCAGGGGACCTCCCCCGACTGTCCAGTGAACTCATCCTGTCTTGGCTCCTGGGACTCAAGGAAGTCCTTCAGAATATCTCTAAAGGCAATGTTGATCTTTGGTTTTATCTTTAGATGCTGCTTGCATAATGGGCAGACTAGGTCATTGATAGTCATGTGGCAGCTTAGGCAGGCACTGCAGAAGGTGTGACCACAGGCGGTAGTGACAGGCTCATTCAGCAAGTCAATGCAAATGGAACATTTGAGGTGTTGCAAGATGGATACAGGAGTGTCTCGAAGAGAAGTGAAGGAAGATGTGAGGGATGCGAAGGAACTCATGGCTGAATCCATGTTATCTGTTGATAATTGGTACAGGCTGGTAATTTTGTTATATTTGGCATCCCATTTGAGGCAAAACACTTAAAGTATAATAGGTTTTATATGGCTTAACATAGGCAGAATGAACTGTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU466402 True 724 lncRNA 0.47 3 7055328 7061670

Neighbor

gene id symbol gene type direction distance location
LOC113544234 LOC108260940 coding upstream 13416 7034279 ~ 7041912 (+)
casq1b LOC108260939,LOC108442777,LOC106577953,LOC100194596,LOC107726186 coding upstream 22598 7000205 ~ 7032730 (+)
zgc:92594 LOC108260947 coding upstream 108605 6939707 ~ 6946723 (+)
sb:cb1081 NA coding upstream 117955 6926560 ~ 6937373 (+)
supt16h supt16h coding upstream 278984 6762469 ~ 6776344 (+)
LOC113544270 LOC108260482 coding downstream 239969 7301639 ~ 7306530 (+)
si:ch211-63p21.1 LOC108260971,LOC108437862 coding downstream 339699 7401369 ~ 7409804 (+)
LOC113544382 LOC108260553 coding downstream 351526 7413196 ~ 7419635 (+)
LOC113544435 LOC108260879,LOC108437854,LOC105900835,LOC103357730 coding downstream 558430 7620100 ~ 7636047 (+)
LOC113544437 xpo5 coding downstream 897213 7958883 ~ 7978619 (+)
G393150 NA non-coding upstream 106020 6944819 ~ 6949308 (+)
G393140 NA non-coding upstream 159857 6843423 ~ 6895471 (+)
G393116 NA non-coding upstream 173802 6877171 ~ 6881526 (+)
LOC117596334 NA non-coding upstream 192505 6854655 ~ 6862823 (+)
G393124 NA non-coding upstream 234589 6818303 ~ 6820739 (+)
G393301 NA non-coding downstream 24127 7085797 ~ 7086015 (+)
LOC113544421 NA non-coding downstream 71426 7133096 ~ 7151569 (+)
LOC117596340 NA non-coding downstream 93707 7155377 ~ 7163031 (+)
G393351 NA non-coding downstream 116150 7177820 ~ 7245118 (+)
G393394 NA non-coding downstream 229568 7291238 ~ 7349517 (+)
LOC117596330 NA other upstream 154388 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 436646 6614859 ~ 6618682 (+)
lrba lrba other upstream 816250 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 1144736 5831544 ~ 5910592 (+)
LOC113545745 ptprd other upstream 2198354 4463898 ~ 4856974 (+)
G393467 slit1 other downstream 365948 7427618 ~ 7430910 (+)
G394251 NA other downstream 1197258 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 2074287 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 2886071 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 3039267 10100937 ~ 10116924 (+)

Expression


Co-expression Network