G393450 (zgc:55733,LOC108260929,LOC107707310,LOC107657188)


Basic Information

Item Value
gene id G393450
gene name zgc:55733,LOC108260929,LOC107707310,LOC107657188
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7367880 ~ 7371501 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU466576
cccGAGATTTGTGGAGTTAACAGAATGCATGCATGCTGTGTGTGGCGTAATTTCAGACACCCACATATTTCAGTGTAAAGTCTGTGTTTGCATAAGAACGAACGTTTAAGAGTGGTCTCCGTTAGTGCTGTCTCCGTCGTCCTCTCCTTCCTCCTGTTctccttcatcctcctcttcatcttcctcccTTCCTCGACTCTTGATCTCCTCTTCCTCTAAATCACCCTCTTCTTCGTAGTCGTTGATTTCCACATTCTCTCGATCCTTTTTCACGCTAGGATGCTGAGGGGATGTCTCCTCTGCCTTAATGCTCTTCACCTctgatttCTTGCTGTGCTCTCTTTCCATCCTCTCCAGGCTCTCCAGCAGGTAGTCCACTTTGTGTTTGATTTGAGTCAGCTCCTTCTTGATGGTTTGTAGGTCATCAGCTCTCATGGTGCGGGAGGTTCTCTGGCTGCTCTTGGTGGAGAAGCTGCTCTTGGCGCGGCGGCTGCCACTCACGCTGACCCGCGGCCGCTTCGAGGGAATGACTGCACGGGAGAGcgggggagggggaggaggcACCCGCGAGGGGTACGAATACACCCTAACAACACAAACGCACACTAATGTTAAACTTAAAACACGCACCAGATGCATTTCAGAAGCATAATGTCAATGTAGCGTAATCACTTTTCAGCCAATTCAC

Function

symbol description
zgc:55733 Predicted to enable RNA binding activity. Predicted to be located in viral nucleocapsid. Predicted to be active in nucleus.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU466576 True 688 lncRNA 0.50 4 7367880 7371501

Neighbor

gene id symbol gene type direction distance location
LOC113544270 LOC108260482 coding upstream 61350 7301639 ~ 7306530 (+)
LOC113544234 LOC108260940 coding upstream 325968 7034279 ~ 7041912 (+)
casq1b LOC108260939,LOC108442777,LOC106577953,LOC100194596,LOC107726186 coding upstream 335150 7000205 ~ 7032730 (+)
zgc:92594 LOC108260947 coding upstream 421157 6939707 ~ 6946723 (+)
sb:cb1081 NA coding upstream 430507 6926560 ~ 6937373 (+)
si:ch211-63p21.1 LOC108260971,LOC108437862 coding downstream 29868 7401369 ~ 7409804 (+)
LOC113544382 LOC108260553 coding downstream 41695 7413196 ~ 7419635 (+)
LOC113544435 LOC108260879,LOC108437854,LOC105900835,LOC103357730 coding downstream 248599 7620100 ~ 7636047 (+)
LOC113544437 xpo5 coding downstream 587382 7958883 ~ 7978619 (+)
efemp1 efemp1,LOC108437849 coding downstream 645711 8017212 ~ 8051220 (+)
G393394 NA non-coding upstream 18363 7291238 ~ 7349517 (+)
G393351 NA non-coding upstream 122762 7177820 ~ 7245118 (+)
LOC117596340 NA non-coding upstream 204849 7155377 ~ 7163031 (+)
LOC113544421 NA non-coding upstream 216311 7133096 ~ 7151569 (+)
G393301 NA non-coding upstream 281865 7085797 ~ 7086015 (+)
G393484 NA non-coding downstream 77133 7448634 ~ 7528555 (+)
G393994 NA non-coding downstream 550644 7922145 ~ 7922346 (+)
G393997 NA non-coding downstream 552445 7923946 ~ 7924834 (+)
LOC113544216 NA non-coding downstream 619231 7990732 ~ 8006786 (+)
G394103 NA non-coding downstream 689302 8060803 ~ 8061192 (+)
LOC117596330 NA other upstream 466940 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 749198 6614859 ~ 6618682 (+)
lrba lrba other upstream 1128802 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 1457288 5831544 ~ 5910592 (+)
LOC113545745 ptprd other upstream 2510906 4463898 ~ 4856974 (+)
G393467 slit1 other downstream 56117 7427618 ~ 7430910 (+)
G394251 NA other downstream 887427 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 1764456 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 2576240 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 2729436 10100937 ~ 10116924 (+)

Expression


Co-expression Network