G393484


Basic Information

Item Value
gene id G393484
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7448634 ~ 7528555 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU466613
tacttctttttttttttatatatatatatatatctttcacAAACAGATTAATAATTCAGGACATTTGCAACTGGTAAAAACCTAACCACATGCAATGTATTGGTTTAGAAATTCATCTTGTCTGCATAGTTAACAAGTTGGAGGTCACATTTGTTAATTGAGCCCAAATAAATACCACCTAAACCTGATCCaaaattaatttacaaattaaaaaaaattacaggctTAAACTAGAGTGCTGTGCCGTAGAATCGGGAGTTCTTTTGATGGATGTGGAACCCTGGAAGAAGGTGTGATAAAAACTTAATCACAAAGCTAAAGGATGTTGACTAATAAGGTGATATAAATACTAACCATTCTAAGTAACAAAGTAGGTTAACACATGTATTACTGATGCTTGATTAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU466613 True 408 lncRNA 0.31 2 7448634 7528555

Neighbor

gene id symbol gene type direction distance location
LOC113544382 LOC108260553 coding upstream 28999 7413196 ~ 7419635 (+)
si:ch211-63p21.1 LOC108260971,LOC108437862 coding upstream 38830 7401369 ~ 7409804 (+)
LOC113544270 LOC108260482 coding upstream 142104 7301639 ~ 7306530 (+)
LOC113544234 LOC108260940 coding upstream 406722 7034279 ~ 7041912 (+)
casq1b LOC108260939,LOC108442777,LOC106577953,LOC100194596,LOC107726186 coding upstream 415904 7000205 ~ 7032730 (+)
LOC113544435 LOC108260879,LOC108437854,LOC105900835,LOC103357730 coding downstream 91545 7620100 ~ 7636047 (+)
LOC113544437 xpo5 coding downstream 430328 7958883 ~ 7978619 (+)
efemp1 efemp1,LOC108437849 coding downstream 488657 8017212 ~ 8051220 (+)
LOC113544397 mark1,LOC108260538,LOC108414040 coding downstream 538878 8067433 ~ 8125438 (+)
cilk1 ick,LOC108261001,LOC108256381 coding downstream 625496 8154051 ~ 8168988 (+)
G393450 zgc:55733,LOC108260929,LOC107707310,LOC107657188 non-coding upstream 77133 7367880 ~ 7371501 (+)
G393394 NA non-coding upstream 99117 7291238 ~ 7349517 (+)
G393351 NA non-coding upstream 203516 7177820 ~ 7245118 (+)
LOC117596340 NA non-coding upstream 285603 7155377 ~ 7163031 (+)
LOC113544421 NA non-coding upstream 297065 7133096 ~ 7151569 (+)
G393994 NA non-coding downstream 393590 7922145 ~ 7922346 (+)
G393997 NA non-coding downstream 395391 7923946 ~ 7924834 (+)
LOC113544216 NA non-coding downstream 462177 7990732 ~ 8006786 (+)
G394103 NA non-coding downstream 532248 8060803 ~ 8061192 (+)
G394142 NA non-coding downstream 608727 8137282 ~ 8137508 (+)
G393467 slit1 other upstream 17724 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 547694 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 829952 6614859 ~ 6618682 (+)
lrba lrba other upstream 1209556 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 1538042 5831544 ~ 5910592 (+)
G394251 NA other downstream 730373 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 1607402 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 2419186 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 2572382 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 2670768 10199323 ~ 10239199 (+)

Expression


Co-expression Network