G393997


Basic Information

Item Value
gene id G393997
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7923946 ~ 7924834 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU467152
ATGAGGTTACAGATCACGACACGAAGCTGAGAAATTAGGCACAATAAATACAGCTGCTTTGACAATGTAGAAGGCTggaaatatatgtatttttaaagataaaaaaaaaaaaaagatatactaAAAAGTTTTAGACAacaaggaaaaaggaaaaaaaaaaatcaatcaagtAATCTAAGGACAATGTTTTCAAAATCTGATTACATGTTGTACAAAACAGGCTTTTTTGCAGAATAggcataattaattattttcccacaaGAACAAACAGGACACATTTGCTTAAAACTTAAACAGTTGAGTCATTTAAcgttctataaaaaaaaaaaagggcaaaacaAATACTGACTTACGGTAATAGCACTCGCCTCAAAGCTCTGATTAACAAACGTTTAAGAGCTTCAGTGAACTTCAGTGTAAGAACATGGACCTTGAATCCTTGAATTGAGTCTTTTATGCAGAAAATAGACTGAGCTCACGTCTGAAGTGATTtggagatcttttttttttttcagtaactaTAGTGTTTAATCACTGTTACATGGTatatttccacaaaaaaaaaacaaaaacagaaagcttATCCACAGCATACTGCATTTACACAGTTTATCGATTTGGTAAATTCACAGGATTATCTGAGCCCTCTGTATATAAAAACGTCACGTAACAAAGACAAGGCTCCAGCAAATATCTGCGCTGCTATATTGTAGTGAAATTAAAGAGTATGATGTGTTCAGATGTATTCCAGAGGCGAatttcacagaaacacaaaatggTTATCTACTCACAATAGCACAAAGAAAACGTGAAACCATAGAATAGAAAAGTGCAGTGTCTGCAGTGAGAGGTTCAgttctcttttttgttcttcaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU467152 True 889 lncRNA 0.32 1 7923946 7924834

Neighbor

gene id symbol gene type direction distance location
LOC113544435 LOC108260879,LOC108437854,LOC105900835,LOC103357730 coding upstream 287899 7620100 ~ 7636047 (+)
LOC113544382 LOC108260553 coding upstream 504311 7413196 ~ 7419635 (+)
si:ch211-63p21.1 LOC108260971,LOC108437862 coding upstream 514142 7401369 ~ 7409804 (+)
LOC113544270 LOC108260482 coding upstream 617416 7301639 ~ 7306530 (+)
LOC113544234 LOC108260940 coding upstream 882034 7034279 ~ 7041912 (+)
LOC113544437 xpo5 coding downstream 34049 7958883 ~ 7978619 (+)
efemp1 efemp1,LOC108437849 coding downstream 92378 8017212 ~ 8051220 (+)
LOC113544397 mark1,LOC108260538,LOC108414040 coding downstream 142599 8067433 ~ 8125438 (+)
cilk1 ick,LOC108261001,LOC108256381 coding downstream 229217 8154051 ~ 8168988 (+)
vit vit coding downstream 282836 8207670 ~ 8237492 (+)
G393994 NA non-coding upstream 1600 7922145 ~ 7922346 (+)
G393484 NA non-coding upstream 395391 7448634 ~ 7528555 (+)
G393450 zgc:55733,LOC108260929,LOC107707310,LOC107657188 non-coding upstream 552445 7367880 ~ 7371501 (+)
G393394 NA non-coding upstream 574429 7291238 ~ 7349517 (+)
G393351 NA non-coding upstream 678828 7177820 ~ 7245118 (+)
LOC113544216 NA non-coding downstream 65898 7990732 ~ 8006786 (+)
G394103 NA non-coding downstream 135969 8060803 ~ 8061192 (+)
G394142 NA non-coding downstream 212448 8137282 ~ 8137508 (+)
G394147 LOC108260699 non-coding downstream 217013 8141847 ~ 8142593 (+)
G394150 NA non-coding downstream 220609 8145443 ~ 8146117 (+)
G393467 slit1 other upstream 493036 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1023006 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1305264 6614859 ~ 6618682 (+)
lrba lrba other upstream 1684868 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 2013354 5831544 ~ 5910592 (+)
G394251 NA other downstream 334094 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 1211123 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 2022907 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 2176103 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 2274489 10199323 ~ 10239199 (+)

Expression


Co-expression Network