G394147 (LOC108260699)


Basic Information

Item Value
gene id G394147
gene name LOC108260699
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8141847 ~ 8142593 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU467321
ATAAGGTAGCACTCACTAAATTCCCAATTACAGCATGCTACCAACATTTACCTAAgcttattgttttgttttattgctaACAACTTGACAGCATACAGTGTACTGACTACACTGATAAGGAAGGAAAACTGTATTAccaatatacatataataacgTGAACTGTTTACAAACTGTAgctatgtaaacattttttatggTTTGGTCAGGTGCATTGTTCTTGCATTATGGTtcttgttgctgttattatagCTTATGATGTGTAGATAATTAGAAAAAGAATTACGTCACTGAGATTTATTTAACCAAAATACCCTAAGAATAACtggaataacaaaaaaaatgacattgtataaacatataatacaaTCAGTACTAGGCAAAAAAAAgactagattaaaaaaaaaaaagtcaggaatTAGATAAGTACTTTTAATTCCCTACTGAGTAACAGCTCTTTGACCTGGCGTAATTACCGTGCCACAGCAAAGCCTTTGCCATTTATGCCTCAGCTGGCAAAGGCTGTAGAGGACGGGGTTCAGGGCTGAGTTTGCCATGGTGAAGGTCAGCACccagacaaacatggaggaggtTATGGGAAGATGGACTTGGAAGTTGTTCATAAGAATGAGAAAGGTGAAGATAAAGATGGGGCTCCACATGATGAAGAAGGATATCATGAGAATAAAGAGTGTACGGAAAAGTTTGTAGTCCTGTTTAGACACTGCTCTTGCCTGTGCTTGTCTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU467321 True 747 lncRNA 0.37 1 8141847 8142593

Neighbor

gene id symbol gene type direction distance location
LOC113544397 mark1,LOC108260538,LOC108414040 coding upstream 16409 8067433 ~ 8125438 (+)
efemp1 efemp1,LOC108437849 coding upstream 90627 8017212 ~ 8051220 (+)
LOC113544437 xpo5 coding upstream 163228 7958883 ~ 7978619 (+)
LOC113544435 LOC108260879,LOC108437854,LOC105900835,LOC103357730 coding upstream 505800 7620100 ~ 7636047 (+)
LOC113544382 LOC108260553 coding upstream 722212 7413196 ~ 7419635 (+)
cilk1 ick,LOC108261001,LOC108256381 coding downstream 11458 8154051 ~ 8168988 (+)
vit vit coding downstream 65077 8207670 ~ 8237492 (+)
si:ch1073-291c23.2 LOC108260910 coding downstream 98046 8240639 ~ 8252667 (+)
ddx21 ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728 coding downstream 121386 8263979 ~ 8279460 (+)
LOC113544354 LOC108260789,LOC108260790 coding downstream 146698 8289291 ~ 8301011 (+)
G394142 NA non-coding upstream 4339 8137282 ~ 8137508 (+)
G394103 NA non-coding upstream 80655 8060803 ~ 8061192 (+)
LOC113544216 NA non-coding upstream 135061 7990732 ~ 8006786 (+)
G393997 NA non-coding upstream 217013 7923946 ~ 7924834 (+)
G393994 NA non-coding upstream 219501 7922145 ~ 7922346 (+)
G394150 NA non-coding downstream 2850 8145443 ~ 8146117 (+)
G394153 NA non-coding downstream 5961 8148554 ~ 8149032 (+)
G394155 LOC108413271 non-coding downstream 8810 8151403 ~ 8152388 (+)
G394156 NA non-coding downstream 9867 8152460 ~ 8153778 (+)
G394229 NA non-coding downstream 92086 8234679 ~ 8235160 (+)
G393467 slit1 other upstream 710937 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1240907 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1523165 6614859 ~ 6618682 (+)
lrba lrba other upstream 1902769 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 2231255 5831544 ~ 5910592 (+)
G394251 NA other downstream 116335 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 993364 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1805148 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1958344 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 2056730 10199323 ~ 10239199 (+)

Expression


Co-expression Network