G394156


Basic Information

Item Value
gene id G394156
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8152460 ~ 8153778 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU467330
ccgggttcgattcactctcagtgccagtcccaagcccagataaaaccggggagggttgcatcaggaagggcataaaatatgccaaatcaaacatgcggaccaatgaatccgctgtggcgacccctaagaagaacaacaacgtataatattaataataataagttagggctaaatcttctgtcagcttaataattttttatggGGCTTACAGCTACAGCAAGACAGACCGGCACATCCTCCATTTATACAGcaacatttcttttgtcataattaaatgattcgttttatttgtcttaatttacgggtttgtgttggctagctttctttattattattctttttttacattctttaatcaatgccaataatataaaacgaCTGGTTTCCACAAAATGTTCTGGATGCTATTCTTAGTCACTGTCCtggtgaactagcatgagggggtgtttttgatagagactccaaagcacttctgtaagccGCTCTGGataaaatgctgtaaacgtaataaaaataatcaaattaacctcaacagtatattccatatataaaagtgcagtaaagtGTGCAAATTATATGAGCTGAAATGATCTGAAGTccaggtttacattagttattcTTCTTATGCGTAAGtctgcacacactcaggagcacgagtaggttACGAAcgtttttccaaatttacaggattttcataaataaatacttgggatttcttgtgtaaatgcttgaAAGAactatttatgaataaatctgttggTATCCAGGttcataaatgaggcccagtgtgaGTACACAGAccaagtgtttcatttctgAACTGACTCCACTTCACTGGAGCTGAAACTGCTCAGATTAACCTCCAGAAAGCAGTGGTTGTTCTGGGAGTCGGATGGCGCCTCCTTCTGGCGACAAACTTCCTCCAGTGTCTTTCTCAGATAAGCGTTTTCCTCCCTCACTTTATTCATGTCCTCCTCAGAGTGACTACTGGACTTTCTAGAAAATTTAGACGCCATTTTTCTGAACCTGCAAAACAACATAACTTTAGATAACAGTCATTTTTCTTCACTGTAGTTAATCTAACCGTTAACCGTGTGTATGAGAGCTAGCTAATTTGCTAGCTGTTTAACGTTAGCCACAATTAGCGTAAATTACAGCTCTTTTAGATAAGAATTATTCGAGAATAAAAAGGCATTTTTTGTCTAATCCTCGGCTATCACCTTTAGCTGTACCTGAACAAAATATATACCTGTTAAcctgactttatttataaaatctttttttctccatatttgGGAAACTTTATCACTCACGCGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU467330 True 1319 lncRNA 0.38 1 8152460 8153778

Neighbor

gene id symbol gene type direction distance location
LOC113544397 mark1,LOC108260538,LOC108414040 coding upstream 27022 8067433 ~ 8125438 (+)
efemp1 efemp1,LOC108437849 coding upstream 101240 8017212 ~ 8051220 (+)
LOC113544437 xpo5 coding upstream 173841 7958883 ~ 7978619 (+)
LOC113544435 LOC108260879,LOC108437854,LOC105900835,LOC103357730 coding upstream 516413 7620100 ~ 7636047 (+)
LOC113544382 LOC108260553 coding upstream 732825 7413196 ~ 7419635 (+)
cilk1 ick,LOC108261001,LOC108256381 coding downstream 273 8154051 ~ 8168988 (+)
vit vit coding downstream 53892 8207670 ~ 8237492 (+)
si:ch1073-291c23.2 LOC108260910 coding downstream 86861 8240639 ~ 8252667 (+)
ddx21 ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728 coding downstream 110201 8263979 ~ 8279460 (+)
LOC113544354 LOC108260789,LOC108260790 coding downstream 135513 8289291 ~ 8301011 (+)
G394155 LOC108413271 non-coding upstream 72 8151403 ~ 8152388 (+)
G394153 NA non-coding upstream 3428 8148554 ~ 8149032 (+)
G394150 NA non-coding upstream 6343 8145443 ~ 8146117 (+)
G394147 LOC108260699 non-coding upstream 9867 8141847 ~ 8142593 (+)
G394142 NA non-coding upstream 14952 8137282 ~ 8137508 (+)
G394229 NA non-coding downstream 80901 8234679 ~ 8235160 (+)
G394260 NA non-coding downstream 125756 8279534 ~ 8280204 (+)
G394262 NA non-coding downstream 131228 8285006 ~ 8285339 (+)
G394291 NA non-coding downstream 266904 8420682 ~ 8440437 (+)
G394306 NA non-coding downstream 312491 8466269 ~ 8466602 (+)
G393467 slit1 other upstream 721550 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1251520 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1533778 6614859 ~ 6618682 (+)
lrba lrba other upstream 1913382 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 2241868 5831544 ~ 5910592 (+)
G394251 NA other downstream 105150 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 982179 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1793963 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1947159 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 2045545 10199323 ~ 10239199 (+)

Expression


Co-expression Network