G394229


Basic Information

Item Value
gene id G394229
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8234679 ~ 8235160 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU467413
tcattaattaaataagaacccctggaaacactggaaaacaccaGCGGTAGAAACGccagcagttgaCCTGTCATGCAGTGGTGCAAGGTCTTGTTAATTATGTGATCTTTGTTTATCCTTCTAGATTAGTATCTGACTACTCACTTGTGcccacatgaaaataaaaacctcctgcttgtGCCTTTTTTGGTTGCACACCcttagtctcaaccagatgccctgtgaaccttcctttaaaaaattaatagtgcgcttctttttttttctatatttgtaTCTGCTCATTACGac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU467413 True 291 lncRNA 0.39 2 8234679 8235160

Neighbor

gene id symbol gene type direction distance location
cilk1 ick,LOC108261001,LOC108256381 coding upstream 65691 8154051 ~ 8168988 (+)
LOC113544397 mark1,LOC108260538,LOC108414040 coding upstream 109241 8067433 ~ 8125438 (+)
efemp1 efemp1,LOC108437849 coding upstream 183459 8017212 ~ 8051220 (+)
LOC113544437 xpo5 coding upstream 256060 7958883 ~ 7978619 (+)
LOC113544435 LOC108260879,LOC108437854,LOC105900835,LOC103357730 coding upstream 598632 7620100 ~ 7636047 (+)
si:ch1073-291c23.2 LOC108260910 coding downstream 5479 8240639 ~ 8252667 (+)
ddx21 ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728 coding downstream 28819 8263979 ~ 8279460 (+)
LOC113544354 LOC108260789,LOC108260790 coding downstream 54131 8289291 ~ 8301011 (+)
LOC113544353 LOC108260790,LOC108260789 coding downstream 94505 8329665 ~ 8350126 (+)
chs1 chs2 coding downstream 143254 8378414 ~ 8389447 (+)
G394156 NA non-coding upstream 80901 8152460 ~ 8153778 (+)
G394155 LOC108413271 non-coding upstream 82291 8151403 ~ 8152388 (+)
G394153 NA non-coding upstream 85647 8148554 ~ 8149032 (+)
G394150 NA non-coding upstream 88562 8145443 ~ 8146117 (+)
G394147 LOC108260699 non-coding upstream 92086 8141847 ~ 8142593 (+)
G394260 NA non-coding downstream 44374 8279534 ~ 8280204 (+)
G394262 NA non-coding downstream 49846 8285006 ~ 8285339 (+)
G394291 NA non-coding downstream 185522 8420682 ~ 8440437 (+)
G394306 NA non-coding downstream 231109 8466269 ~ 8466602 (+)
G394373 NA non-coding downstream 425536 8660696 ~ 8661230 (+)
G393467 slit1 other upstream 803769 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1333739 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1615997 6614859 ~ 6618682 (+)
lrba lrba other upstream 1995601 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 2324087 5831544 ~ 5910592 (+)
G394251 NA other downstream 23768 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 900797 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1712581 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1865777 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1964163 10199323 ~ 10239199 (+)

Expression


Co-expression Network