G394260


Basic Information

Item Value
gene id G394260
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8279534 ~ 8280204 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU467447
actcaGTAGACACATGGTTTGTCAAAgaaatgtacaattttaaagtataaaaaattatatttattataaaagcaatgTAGGACtgacaaagttctggaactATATGTGTCAAGTTACTCAGCGCAATTGTCATTACTGTAGTAATAAGTTTGAACAAAAAgcagggggggaaaaaaaccttaaaGCACCACTCAGTCTTCATTTGGACAGGAAGTGTCTGAATAGACGTACGTGCTCCTGAAAATCTAAAGCAGAAGTCACATTTAGTCCAAGTCTGTATCAGCTTAGAAAGTGATCATGacagtgcagaaaaaaagagaaaaaaatcaacttcagCATTATAGACTGAGGCCTAAATTAAAGAGTTTGATAGATGTAATGCATTTCACACAAAACATGGTTATAGCTTAATAGCAATCACTAGCATTCTTAGTGCACCTAATATTCATATACAGGCAGTCATGCTTATAGTTTGTCAAACAATCAGGAAGAAGGTCCATTAGTTGTGTGTTCTGTATTTGATTGCACTTTTGTAATGCTTATGATCcactgtaagtgttactgaaaaCTTTGATTAGCTGTCTTGCTGGTTATCTCAGACAAATTGACTTGTCATGTTGTGATTGTGCCAGTCTGCCTGGAAGGGGTAGCTAGAACAGTCCATTGTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU467447 True 671 lncRNA 0.36 1 8279534 8280204

Neighbor

gene id symbol gene type direction distance location
ddx21 ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728 coding upstream 74 8263979 ~ 8279460 (+)
si:ch1073-291c23.2 LOC108260910 coding upstream 26867 8240639 ~ 8252667 (+)
vit vit coding upstream 42042 8207670 ~ 8237492 (+)
cilk1 ick,LOC108261001,LOC108256381 coding upstream 110546 8154051 ~ 8168988 (+)
LOC113544397 mark1,LOC108260538,LOC108414040 coding upstream 154096 8067433 ~ 8125438 (+)
LOC113544354 LOC108260789,LOC108260790 coding downstream 9087 8289291 ~ 8301011 (+)
LOC113544353 LOC108260790,LOC108260789 coding downstream 49461 8329665 ~ 8350126 (+)
chs1 chs2 coding downstream 98210 8378414 ~ 8389447 (+)
LOC113544399 sult6b1 coding downstream 120590 8400794 ~ 8410541 (+)
slc30a6 slc30a6 coding downstream 134269 8414473 ~ 8437196 (+)
G394229 NA non-coding upstream 44374 8234679 ~ 8235160 (+)
G394156 NA non-coding upstream 125756 8152460 ~ 8153778 (+)
G394155 LOC108413271 non-coding upstream 127146 8151403 ~ 8152388 (+)
G394153 NA non-coding upstream 130502 8148554 ~ 8149032 (+)
G394150 NA non-coding upstream 133417 8145443 ~ 8146117 (+)
G394262 NA non-coding downstream 4802 8285006 ~ 8285339 (+)
G394291 NA non-coding downstream 140478 8420682 ~ 8440437 (+)
G394306 NA non-coding downstream 186065 8466269 ~ 8466602 (+)
G394373 NA non-coding downstream 380492 8660696 ~ 8661230 (+)
G394520 NA non-coding downstream 572340 8852544 ~ 8852767 (+)
G394251 NA other upstream 20232 8258928 ~ 8259302 (+)
G393467 slit1 other upstream 848624 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1378594 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1660852 6614859 ~ 6618682 (+)
lrba lrba other upstream 2040456 6039414 ~ 6239078 (+)
LOC113544250 NA other downstream 855753 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1667537 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1820733 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1919119 10199323 ~ 10239199 (+)
G395242 NA other downstream 2226386 10506590 ~ 10516369 (+)

Expression


Co-expression Network