G394262


Basic Information

Item Value
gene id G394262
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8285006 ~ 8285339 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU467449
TTGCGATTGTTTGTAATCAATTGACAGAAAAATTGTCTTTCAGCACATGCATTACTGACGGCTCCTTTAACAACTCTTTGCTTAGACTGTATTGTCATAAGTCAATTTagataaaaatatcaaaagagTAAATCTAAATGTAATGTAGAAGTGATATATTGGCGTTTAACACTTGCCTTTTCTCTTCTTTGGCAATTTGCTGTTGGGGAGTAGAATATAGACTCTAAAAGCATTGTGGCCTTTCTTGATGCTTTTGTCTCGAAGCTCTTGGACGTCTGGCAAGGAGTTGAGAGCACAGCGGAAGTTGGCTTTCCAAGTCTTGGGATCTGGTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU467449 True 334 lncRNA 0.38 1 8285006 8285339

Neighbor

gene id symbol gene type direction distance location
ddx21 ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728 coding upstream 5546 8263979 ~ 8279460 (+)
si:ch1073-291c23.2 LOC108260910 coding upstream 32339 8240639 ~ 8252667 (+)
vit vit coding upstream 47514 8207670 ~ 8237492 (+)
cilk1 ick,LOC108261001,LOC108256381 coding upstream 116018 8154051 ~ 8168988 (+)
LOC113544397 mark1,LOC108260538,LOC108414040 coding upstream 159568 8067433 ~ 8125438 (+)
LOC113544354 LOC108260789,LOC108260790 coding downstream 3952 8289291 ~ 8301011 (+)
LOC113544353 LOC108260790,LOC108260789 coding downstream 44326 8329665 ~ 8350126 (+)
chs1 chs2 coding downstream 93075 8378414 ~ 8389447 (+)
LOC113544399 sult6b1 coding downstream 115455 8400794 ~ 8410541 (+)
slc30a6 slc30a6 coding downstream 129134 8414473 ~ 8437196 (+)
G394260 NA non-coding upstream 4802 8279534 ~ 8280204 (+)
G394229 NA non-coding upstream 49846 8234679 ~ 8235160 (+)
G394156 NA non-coding upstream 131228 8152460 ~ 8153778 (+)
G394155 LOC108413271 non-coding upstream 132618 8151403 ~ 8152388 (+)
G394153 NA non-coding upstream 135974 8148554 ~ 8149032 (+)
G394291 NA non-coding downstream 135343 8420682 ~ 8440437 (+)
G394306 NA non-coding downstream 180930 8466269 ~ 8466602 (+)
G394373 NA non-coding downstream 375357 8660696 ~ 8661230 (+)
G394520 NA non-coding downstream 567205 8852544 ~ 8852767 (+)
G394527 NA non-coding downstream 627541 8912880 ~ 8913084 (+)
G394251 NA other upstream 25704 8258928 ~ 8259302 (+)
G393467 slit1 other upstream 854096 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1384066 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1666324 6614859 ~ 6618682 (+)
lrba lrba other upstream 2045928 6039414 ~ 6239078 (+)
LOC113544250 NA other downstream 850618 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1662402 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1815598 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1913984 10199323 ~ 10239199 (+)
G395242 NA other downstream 2221251 10506590 ~ 10516369 (+)

Expression


Co-expression Network