G394291


Basic Information

Item Value
gene id G394291
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8420682 ~ 8440437 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU467489
acacacacacacacacacaaacatattaaatatcagccaactgtgtgtgtgtaagggaaAGTGCAAAAATATAGACAGACGGCAGAAACTGCCACCACTGCGTTGTACACAGGAAATGGATGCCGCTCAAGTATTGAGCAGAGAAGTGAAAGCCGATCTCAACGTCAATACCAAGCACACCGATCCGTACATCTTCCTGCAGACAGAGGACAAAAGATCCAGAGGACAAGAGTGTGTTGGTACACTTCCCATATGGTGTTTATCCACACCGAAATGAAACGCTAATATTTATGGCATTGAGGGGAAGATTTTGTTTCTTACATGCTTGCTCAACTTGTAGCAACAGGGATAGAGACAGAACTTGCTGCACCCTTTTAAAGATATACATACCCTCACTGACAACTCTATTAGGAACACGTGTACAACACGTGTACACCTGCACGTTCATGGAATAACCAATAAGGCTGCAACatgacaaaatgtgaaaaaaaaaacaaaaaacgaagGAATCTGAACACTTTCTGAATGCACCGTGTataaatactttatatatactgtagttagagatagatagatagatagataggcagatagatatagatattattatatttagatATAGCAGTCACAGAAGGCCTTCCAGTTCTTGCATTGAAGGTGTCTTGAATGTTCAAAGATAGCtccaaagatttaaaaaaaaaaaaaaagcttaacgTCTAATTCTTTCCTATTTTATTCTTTCAGAACTTTTATAAGTCagtcttttttatgttttatgatggTTTTGGCTATGTGATGCCCCACACGTTTGTCTTTGCATGTTCATCTCCATTTGTTTCTGAGCATGTAAGCAATCTTCACGTCCCACAGAAAActctaaaatgtaaaacagaTGAGTCTACAGGACGCCGCTTGCTTCAGTCAGCTCGCCGAGATCAAATTCTGCATCGGAAGACTGTATCGCGTTACTAGCTGTCGAAAATGTACACACTTTAATCCAATACgcacattcttcttttgtcaacaCTTCTTTTAGCTAGATCAATGTGGCACAGTGTCTCAAACTGAAGTGGATATACACTAAgtacttgaagaaaaaaaaaatgggaacaGCCTGTCTGTGTTCTTTTTCCGCTTTTAGAAAAGTGATCAGTATTGTAACCTTTACTATGGTTTATTTCAGAACATTACTACGTGCTTTATGCATGTCATTCTGCCATTTACTGCATTGTGGATAGGACAGATTCTCCACTTAGATTGTACTGAACTCTTGTATCAAGAGCAAGTCAAAGTGttaattgtgtgcatgtgtgtatgtctaaATTAGTGGGTCGCcgaaggtcaaatgtctgattTGCAAGTGACCAAACAGCTTCCTGTTTTTAACTTCACTCTTATACATCTTACGTTTTCATTGgctaattttcatttttcattcacctTTACCAAATCATACAACATAATACAACATAcatcataatattttattacacagtGGATATCAAAAgtccacacacccctgttaaaatggcagatttctgtgatgtaaaaaaatgaaatcaagataaatcatgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU467489 True 1575 lncRNA 0.37 2 8420682 8440437

Neighbor

gene id symbol gene type direction distance location
LOC113544399 sult6b1 coding upstream 10141 8400794 ~ 8410541 (+)
chs1 chs2 coding upstream 31235 8378414 ~ 8389447 (+)
LOC113544353 LOC108260790,LOC108260789 coding upstream 70556 8329665 ~ 8350126 (+)
LOC113544354 LOC108260789,LOC108260790 coding upstream 119671 8289291 ~ 8301011 (+)
ddx21 ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728 coding upstream 141222 8263979 ~ 8279460 (+)
LOC113544248 LOC108260666 coding downstream 34447 8474884 ~ 8486535 (+)
LOC113544387 sptbn1,LOC108260989,LOC108414519,LOC105890945 coding downstream 55639 8496076 ~ 8583090 (+)
slc12a10.1 NA coding downstream 169030 8609467 ~ 8623393 (+)
nvl nvl,LOC107558213 coding downstream 221807 8662244 ~ 8685925 (+)
trnal-cag_18 NA coding downstream 255760 8696197 ~ 8696279 (+)
G394262 NA non-coding upstream 135343 8285006 ~ 8285339 (+)
G394260 NA non-coding upstream 140478 8279534 ~ 8280204 (+)
G394229 NA non-coding upstream 185522 8234679 ~ 8235160 (+)
G394156 NA non-coding upstream 266904 8152460 ~ 8153778 (+)
G394155 LOC108413271 non-coding upstream 268294 8151403 ~ 8152388 (+)
G394306 NA non-coding downstream 25832 8466269 ~ 8466602 (+)
G394373 NA non-coding downstream 220259 8660696 ~ 8661230 (+)
G394520 NA non-coding downstream 412107 8852544 ~ 8852767 (+)
G394527 NA non-coding downstream 472443 8912880 ~ 8913084 (+)
G394555 NA non-coding downstream 567437 9007874 ~ 9008080 (+)
G394251 NA other upstream 161380 8258928 ~ 8259302 (+)
G393467 slit1 other upstream 989772 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1519742 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1802000 6614859 ~ 6618682 (+)
lrba lrba other upstream 2181604 6039414 ~ 6239078 (+)
LOC113544250 NA other downstream 695520 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1507304 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1660500 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1758886 10199323 ~ 10239199 (+)
G395242 NA other downstream 2066153 10506590 ~ 10516369 (+)

Expression


Co-expression Network