rps6 (rps6)


Basic Information

Item Value
gene id rps6
gene name rps6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 284647 ~ 289660 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910787.2
CGTCAGTTAGCGTCAGTGTGAAATCTCGCGATATTTGgagagtgtatgtgagagtACGCGGCGGATTTCCGGTCTCTTTTCCGCGGTGGACTCCCGCACAGACAGTCCTCCAGAATGAAGCTCAATATCTCTTTTCCTGCCACCGGCTGCCAGAAGCTCATCGAGGTGGACGATGAGCGCAAACTGAGGACCTTCTACGAGAAGCGCATGGCCACTGAGGTGGCTGCCGACCCCCTGGGTGATGAGTGGAAGggctACGTGGTGCGCATCAGCGGAGGAAACGATAAGCAGGGCTTCCCCATGAAGCAGGGTGTTCTGACTAACGGCCGTGTGCGTCTGCTCCTCAGCAAGGGTCACTCGTGCTACAGGCCACGCCGCACCGGAGAACGCAAACGCAAATCCGTCCGCGGCTGCATCGTCGACGCCAACCTCAGCGTCCTCAACCTGGTCATCGTCAGGAAGGgtgagaaGGACATCCCCGGCCTGACCGACAGCACCGTGCCCCGCCGCCTGGGCCCCAAGAGAGCCAGCAAGATCCGCAAGCTCTTCAACCTGTCCAAGGAGGACGATGTGAGGCAGTACGTGGTGCGCCGACCCCTCACTAAGGAAGGTAAGAAGCCCAGGACCAAGGCCCCTAAGATCCAGCGCTTGGTGACGCCCCGTGTGCTGCAGCACAAACGCCGCCGCATCGCCCTCAAGAGACAGCGCACGCAGAAGAACAAGGACGAAGCTGCGGAGTACGCCAAGATGCTGGCCAAGAGGCTGAAGGAGGCCAAAGAGAAACGTCAGGAGAAGATCGCCAAGAGACGCCGCCTCTCCTCCCTGAGAGCCTCCCAGTCCAAATCCGAGTCCAGCCAGAAATAAAAACTCGACGCTCGTacatcacaaataaaacatcaaaatggtTTTGCTCAA

Function

symbol description
rps6 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Is expressed in liver. Orthologous to human RPS6 (ribosomal protein S6).

NR:

description
PREDICTED: 40S ribosomal protein S6

GO:

id name namespace
GO:0006412 translation biological_process
GO:0042593 glucose homeostasis biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005634 nucleus cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02991 RP-S6e, RPS6; small subunit ribosomal protein S6e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910787.2 True 915 mRNA 0.58 6 284647 289660

Neighbor

gene id symbol gene type direction distance location
LOC113524531 LOC108260598 coding upstream 103905 125116 ~ 180742 (+)
LOC117596366 NA coding upstream 136905 145825 ~ 147742 (+)
LOC117596367 NA coding upstream 170034 112191 ~ 114613 (+)
si:ch211-217k17.11 NA coding upstream 210193 69450 ~ 74454 (+)
ccdc86 ccdc86,si:ch211-217k17.7,LOC107570826,LOC107675318,LOC107571916,LOC107746093 coding upstream 216745 60948 ~ 67902 (+)
trnak-uuu_21 NA coding downstream 27922 317582 ~ 317654 (+)
LOC117596377 LOC108260518 coding downstream 115450 405110 ~ 408556 (+)
LOC117596316 LOC108260515,LOC108260518,LOC108260589 coding downstream 171645 461305 ~ 499554 (+)
LOC117596373 LOC108260589,LOC108260518 coding downstream 184455 474115 ~ 483907 (+)
LOC113545724 NA coding downstream 223150 512810 ~ 517919 (+)
G389450 glb1 non-coding upstream 235027 47572 ~ 49620 (+)
G389490 LOC108260594,LOC108260595,LOC108260596 non-coding downstream 49213 338873 ~ 346593 (+)
G389492 NA non-coding downstream 49940 339600 ~ 375948 (+)
G389442 NA non-coding downstream 63147 352807 ~ 374670 (+)
G389498 NA non-coding downstream 114044 403704 ~ 404420 (+)
G389500 NA non-coding downstream 128424 418084 ~ 434111 (+)
G389456 LOC108260598 other upstream 103634 99214 ~ 181013 (+)
smu1b LOC108260605,LOC108431794,LOC107720315,LOC107692159,LOC107746727,LOC107551820 other downstream 1319 290979 ~ 328491 (+)
LOC113524533 NA other downstream 43479 333139 ~ 348335 (+)
LOC117596315 NA other downstream 58736 348396 ~ 350005 (+)
G389438 LOC108260589,LOC108260518,LOC108260515 other downstream 112342 402002 ~ 950407 (+)
G389524 NA other downstream 497716 787376 ~ 800566 (+)

Expression


Co-expression Network