LOC113544248 (LOC108260666)


Basic Information

Item Value
gene id LOC113544248
gene name LOC108260666
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8474884 ~ 8486535 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942941.2
ACAAGTGCAGCTTGGCATACACAATGTCTGGTGAAACTGGTTCAAGTGGCAGCGATCTCTGCTCTGTGGATTTTGAGATATTTGGCTATGTTCAGGGTGTCTTCTTTCGTATGCACTcagagaagaagggaaacagCCTTGGTTTGGTTGGCTGGGTGAAGAACACAAACCAGGGGACAGTGGTGGGACAGGTTCAAGGACCACGTCATCTAGTAAATGAAATGAAGATATGGCTGAGTAAGGAGGGAAGCCCAGGCAGCCGCATCAGTCGGGCTGTTTTCCAAAACGAGAGGTCCATCCCTCAACTGGAGCTCTCTGGCTTCACCACCCGATACTGACGTACAACCCAACAAGCCACTTCTGTTTCTGAACTACCATTCAGAAACCCACTATTACTAATCCCACTAATCCCACAACCAAAGATCAGCCACTATATCAACATTTATAACAAACGAATCTATAAcgataacacatttttaaattcctcTTGTGCTCTAAACAATTTGTACTAGTAAAAGGTTGTATATTTCTTGAAACAATCATAACAAATTTCATGACTTCATGTGcataatgtattatattaatgtgtgtgtgtgtgtggtgtgtgtgtggttgtactCCAGATGGTTGCACTCCAGTGCCATATATGGGATTGGAAACATGGTCTCGTAATAGCATTTACACTGCATGTAGCTTCTAAATCTAAATCCTTACAAACCCAACACAAGAAAAGATCCAACTTTAAGTCATAGGCATTGAAATATTTTGGTAAACTCTATGATTTTACCATTATGATTGTATCAGTTCATATAATTAGCATATAAATTAGTACAAATTGTAATGTTTTACCATGACCTCATTTTGCTTGATGTTCTAGCTTCGGGGTGGGTTTGTGTTTACCTTAAGGGCTAACAATGTTCATCATATAAAcccagttcattcattcattcattcattcattcattcgttcattcttCCACTTTTCCTGATGCTCATGATGGCAACAGCCACAAGAAATTAAGCATGTGAACCTAATCATAGGCATAGCTTAAACCAGATACTCAGATAGCATGCCTCATCACTTTTTAAAAGAGTTgtccattaatttttttttaaaaaactgaccTGAACACTTTCTACAAATATAACTATTTATGTTGTTAGTTCGGTGTGTTAAAAATGTCTCTTCTACAATAAAACTCTTGCATCTTGAGGGACATAAAATAACAGTGCACCTGGACGTTTACATGTACATTCAGTCACATTATtgtatcatacatttatttatttaaaaaaaaaactataatctACATTGATATTGTGGCATATAAGACTATAAAGTGAGGCTTTATC

Function

GO: NA

KEGG:

id description
K01512 acyP; acylphosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942941.2 True 1353 mRNA 0.37 4 8474884 8486535

Neighbor

gene id symbol gene type direction distance location
slc30a6 slc30a6 coding upstream 37688 8414473 ~ 8437196 (+)
LOC113544399 sult6b1 coding upstream 64343 8400794 ~ 8410541 (+)
chs1 chs2 coding upstream 85437 8378414 ~ 8389447 (+)
LOC113544353 LOC108260790,LOC108260789 coding upstream 124758 8329665 ~ 8350126 (+)
LOC113544354 LOC108260789,LOC108260790 coding upstream 173873 8289291 ~ 8301011 (+)
LOC113544387 sptbn1,LOC108260989,LOC108414519,LOC105890945 coding downstream 9541 8496076 ~ 8583090 (+)
slc12a10.1 NA coding downstream 122932 8609467 ~ 8623393 (+)
nvl nvl,LOC107558213 coding downstream 175709 8662244 ~ 8685925 (+)
trnal-cag_18 NA coding downstream 209662 8696197 ~ 8696279 (+)
phf3 phf3 coding downstream 259282 8745817 ~ 8758376 (+)
G394306 NA non-coding upstream 8282 8466269 ~ 8466602 (+)
G394291 NA non-coding upstream 34447 8420682 ~ 8440437 (+)
G394262 NA non-coding upstream 189545 8285006 ~ 8285339 (+)
G394260 NA non-coding upstream 194680 8279534 ~ 8280204 (+)
G394229 NA non-coding upstream 239724 8234679 ~ 8235160 (+)
G394373 NA non-coding downstream 174161 8660696 ~ 8661230 (+)
G394520 NA non-coding downstream 366009 8852544 ~ 8852767 (+)
G394527 NA non-coding downstream 426345 8912880 ~ 8913084 (+)
G394555 NA non-coding downstream 521339 9007874 ~ 9008080 (+)
G394747 NA non-coding downstream 978993 9465528 ~ 9465728 (+)
G394251 NA other upstream 215582 8258928 ~ 8259302 (+)
G393467 slit1 other upstream 1043974 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1573944 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1856202 6614859 ~ 6618682 (+)
lrba lrba other upstream 2235806 6039414 ~ 6239078 (+)
LOC113544250 NA other downstream 649422 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1461206 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1614402 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1712788 10199323 ~ 10239199 (+)
G395242 NA other downstream 2020055 10506590 ~ 10516369 (+)

Expression


Co-expression Network