sb:cb1081


Basic Information

Item Value
gene id sb:cb1081
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6926560 ~ 6937373 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942968.2
CAAATTATTGGATGAAAAAGTGGGGCTGTATTCTGCTATACCATTTAAATGACACCTGGGCACATTCAAACCACATTCAGAGGGCACACTCTACCTCCTAGCACACAGgcaagtgcttgtgtttaaagccGTGGTCTAAAGCCTACTGAAAGACTCTGCCGCGGACTcttctactgaagaaaaatccaACAACCTCGGAGACGTGTACTACGTGAAGcaAGGCACTTTGGAAGACACAGAATCAAAATCAATCAAGGGTTAACCTCAGAACTCTGGCCTGATGGCAAATTATACTGTTCCTTCTCAACGTGGTGGGCAAATTCCACTGAAGACTCAAGACCGAGACCATCTGTCATCCCTTGATGTTGTGTGGGCCAATAAATATGAGGGTGAAATGATCAATCCTACAAATGCCATGCAGATGGAATTCGAGTTTTACAAAGGTGCCCCACCCCAATGGCTGAACTTCTACTGGGCTGAACAAGAGAACTCCCCCTTTGTCAAGCGGGATCTGTATCAGGTACTACAAAGAAAGATCAGtgaaactaaaactaaaagatTGAGCATTGCTCATATTAACTTGTTCCATGAACCAGGCAGTGGAGGGTCCACCCTGGCCATGCAGGTACTATGGGACCTGAGAAAAGAGCTCAGGTGTGCCAAAGTAATAGATTCCACAACAGACAGAAAGGCAATTGCACAGCAAGTGCTGCGGTTATTTAGAGCAGGTGGTTCAGAAAACCAAAATACTGTTCTCCTTCTTCTAGACAATAAGTACACAAGTGACGATCCTTCATTTCGAGAAAACCTTGAAGAAAACCTATGTGATGAAATTAAGATGAACAATATCACTACTACAATCCCTGTGGTCATCATTTTAAACTGTCTCCGCCAGACAGACTTGACTGACAGAACAGAAAATGTAATACTGTCCTCAAGCCTTTCAGAGGAAGAGCAAGACAATTTTAAGAGAAAACAGTCTGACATCATTCAAATACATGGAAACAGACATACCCAACTTTATGCCTTTAACATTATGCTGAGAAATTACGATCCATCTTATGTTACAGAGGTCTGCAGAATTCTTCTgccattaaagaaaaaaaaggaggtcCCGCAAAGAACAACTTCTGGCATTTTTGGCACTGATTAATCATATGTCCCCAGCTCTGATCTCCCCCATGATCTTTGTCAGATGTTCATTGAGAGGCAAGTTAATAAGCTTGTCAATTTATCTTTGGAGCAATATATGCAGCCCTTCACAGACTTTCTGGTCATATTCTCAATGAAAGAAGAAGAGGACAGAAGTGAGAACACACGTGTACGAATGGTACATCCCATGATTGCTCATGAATGTCTAAGATTGTTAGCTGAAGCTGGTGTAACCAGAAGTGACACTACATTGAAGCTACTGACAGAACTGTGCGGAGATGACATGCcgccatgtttggtgaaaactattaaaaaattaCTCACAAAGCGAGAATCTAGGCTGCAAGAACAGGAGAAATTCTCCAGAGTGAGCCTAGATCAATTCTCCAAACTGATCCTAGATATAAAAcgagaagaaaaaacatcctTCTGTGTTGCAGTATTGAAAATGGCCTTGAAGAAATTTACAGCAGATCCATTTTATCCACAAGCTCTTGCCCGTTTCTATTACATTGAGAGGAAAGATTATGAAAAAGCTAAATATTGGGCTGAAATGGCGATTATGAGGGATGAAAGAAACTCCTTTATCAGAGACACCCTTGGACAAGTGCATAAAAACTGCCTAAAAAATCTTGCCTGTAATGAAGAACCCTTGAAAAACCCTGAAGCATATGCTAGAAGAATCTTGCATCATGGAAAAAAAGCAACTGAGGCTTTTAAAGCTGAAGAAGAAGTTGCTGTGGCAGAGGAGGCACCAGAGTTGAAAGAGGATGTCCTGATAAACACATCTACCATCTTCAACAACCGGGGTATCTTCGGCTACATGCAAGtggcaaaaataatttttgaccGTCTCACAGGCTTTCACGATGAATGGGCCAAGGTACTTACAAAGGAAATATCCCCACACCGTTTTCTCAGCTCTTACGGAAGTGGTAAATGTGAGAAGTATAAGAGTCTCATTACAAGTCTAAGAGATGAAGTTGAAGAAAAGTTTGAATTTTTTGAATGGTATCTCCTTTACTCAAAGCCAAGCAGCCACAAAGATGAACCCAAATACTTTAGGCCAGAAGTTGATGCATGCTACAAGAAATTTGTAACACAATCCAAACAGAACAAATCAGCATTTCAGATCCTCAAGGAAAGAAAGGCCAGCACATTTGCAGGATTACTGCACACACAAGACCAAGACACTGAACTGGAACTGATCACTGAACAATGGAAAGAAATTTACTTGCATTCACAGAGTGATGCCAATATTATACAAAACTACATTGCTGCAAATGTCATGTTAAGTCAAAGGAATGGCACATCCACAGCACTCAGACCACTGGGAGAACTTCAGGAAATGCTACACAATCTCTGGACAGAACAGAAAGATAGAAGAAGTCCAGAGTTCTACCTCTTGGTCCTTCTGCTTTTTTGGCCTGATGAACAACAGGGCAGACACAACAGTCTGGACGTATCTGAATGTGTTAGATACATGCATCATTCCTTTGAAAGAACATACAAAAATTACCTACGCTCTCGTTACCTGGttcctctcttcttcctcactgAAGACCACGGACTACGGAGATTTATCCATATATCATGCCTAGAGGAAACTTCAACTGACATTCTTACCAAAGGACGTGAAAGAGCTGAAATTCCGAAACTACGACGTGTGAGAGGAGAGGTGAGAAATTATAAGGTTTTTGCTGTAGAAGGATCTGAGAAGATTGAGGTTTCTCCCAATCATCCAGCCAGTGTGCGTGGTCAAGGAAAGGTTTCTTTCTACCTTGCCTTTAACATCAAGGGACCTGTGGCTTACAACATCAGATATGAGCAATAAAGCTGAAGATAAATACATTAGATATGAGTGTGAGCTCCAGTTAAACAGTAGGGTTCAATGAATACACAGAGATTGGATGAATACTACCTTTATGTAAGATTAATCTCCATtaagtatgaaagtaaaaacaggaTTCTAAACTTTCTACAAATATATCATCACTGGTGTAGGGTCAATTTAATCAATTTTACATAATATATTGGTTTTAGTAATGTTCTTCATAATGGGTCAGCTTTTGCTGGACTACAGTGTCAACTACACATGATCTGAGacactgcttttatttaaatagatcTCTGATGGGATATAGAATTTGACTAACCTTCCGTATCTTACTGCTAGAAAAGGCAAATACGATAAAATAGTTTATGGTTTAGTATAAATACAGTCTGGAACATATTTCGAGTTGACAAGTGCAAAcgttatgtaaatatttactcAGGGAacgttcctcgtattcagacgCGGGTTAAGCTTAAGTCGACTTTCTGGGTGCGCCATTCAGATTATACAAAATACTTGTGCGTAGCTCCAAGATAGCCAGAATTTTCTTGAATAAAGGTGTCCAAGATAAAATTTTTGCCCCATGAGAGCAATGTCTCCAATTATGATGCTGTCTCCTTCAGTGTCctctgtgtggggaaaaaaaagcacttttgtGCAGACTTTAAAAGGACAatgctattaattaattaataatgtcatatttGAGTGTACTTACAGGATAAACCTTACAGTACATTTCAGTGTGATGCATAATgcttacatcacactgtctggATCATTCAAGGTCAGATTCATTGGTAACTGAGACGCCTCCATTTTTTGCACACGCATAAGTCAACTCTGAATCCTTCATTCAGTATTTAACTGCACACTTTGTCATCCATTTCCTGCACATTCATTACACGAATATAATTTCTTCATTTATATGTATACGCTAATACTAAAAGCAGTGACACCTACATGAAATGACATGACTTTAGCTAACACAATCCTTGTGTCTACGCAATTAATCATAAATGGTTTGGCATCAATAACTTGGGTACACCCATTTGGGGAGTCAGCCATTTTGCAACCAGACATCACTATTCTAAGCTAACCAGCATGGCAGTCCAGCAAAACTACCTCtagataatgagataataatcAGGTTTACTGCTCAGACAGTAGCgatgtactgtgtatatatatattttttatttttgttattgttgttcttTTGCTCTGTCATCTGAAATATGCGAATCTTATTCTTATTTCAATAGATAAGTATGTACTATTAGCATGTTAAAGAGTCAGTGGAGGGTCTTATGTGAAtgataggatttttttttttttttgttttcagattcCATTGAGAGTTTAGATAAATTACTATATTCTTTGAAACAGTGCATGCTATTAAATATACTATTGTAATGATgcattgttataaataaaaaaaatcactttttgcctctatagtacacagttatagaagggaattttTTTATGGGATTATGGGATCTAAAggattcttcctcatgttgtgttagggagtttttccttgccaccgtcacctctggcttgctcattagggataaatttataaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942968.2 True 4582 mRNA 0.39 5 6926560 6937373

Neighbor

gene id symbol gene type direction distance location
supt16h supt16h coding upstream 150216 6762469 ~ 6776344 (+)
tox4b tox4 coding upstream 166656 6746669 ~ 6759904 (+)
nop10 NA coding upstream 181306 6720845 ~ 6745254 (+)
LOC113544316 slc12a6 coding upstream 181310 6721795 ~ 6745250 (+)
lpcat4 lpcat4 coding upstream 215805 6699072 ~ 6710755 (+)
zgc:92594 LOC108260947 coding downstream 2334 6939707 ~ 6946723 (+)
casq1b LOC108260939,LOC108442777,LOC106577953,LOC100194596,LOC107726186 coding downstream 62832 7000205 ~ 7032730 (+)
LOC113544234 LOC108260940 coding downstream 96906 7034279 ~ 7041912 (+)
LOC113544270 LOC108260482 coding downstream 364266 7301639 ~ 7306530 (+)
si:ch211-63p21.1 LOC108260971,LOC108437862 coding downstream 463996 7401369 ~ 7409804 (+)
G393140 NA non-coding upstream 31089 6843423 ~ 6895471 (+)
G393116 NA non-coding upstream 45034 6877171 ~ 6881526 (+)
LOC117596334 NA non-coding upstream 63737 6854655 ~ 6862823 (+)
G393124 NA non-coding upstream 105821 6818303 ~ 6820739 (+)
LOC113544411 NA non-coding upstream 146623 6777336 ~ 6779937 (+)
G393150 NA non-coding downstream 7446 6944819 ~ 6949308 (+)
G393293 NA non-coding downstream 117955 7055328 ~ 7061670 (+)
G393301 NA non-coding downstream 148424 7085797 ~ 7086015 (+)
LOC113544421 NA non-coding downstream 195723 7133096 ~ 7151569 (+)
LOC117596340 NA non-coding downstream 218004 7155377 ~ 7163031 (+)
LOC117596330 NA other upstream 25620 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 307878 6614859 ~ 6618682 (+)
lrba lrba other upstream 687482 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 1015968 5831544 ~ 5910592 (+)
LOC113545745 ptprd other upstream 2069586 4463898 ~ 4856974 (+)
G393467 slit1 other downstream 490245 7427618 ~ 7430910 (+)
G394251 NA other downstream 1321555 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 2198584 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 3010368 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 3163564 10100937 ~ 10116924 (+)

Expression


Co-expression Network