si:cabz01101003.1 (LOC108260805)


Basic Information

Item Value
gene id si:cabz01101003.1
gene name LOC108260805
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6673138 ~ 6687356 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943064.2
aaAACTTTCCTTGCTGCTGATTGGTGTTCTTTGCTGTCCATCATTTCGTTTCCTGTTTtcgattttttttcctcctgcgCTGAAGTACCAAAGTTTAATTCACGGCGATATCGATGTTGtgagtTAGTCGCTTTTACCATGTCGGCCGTCACGCAACAAAACAGAAGGAGACGCCCCCCTAAAATGTACATACTGACGTCCGACCACAAGGTACAAGACCACCTGGATGGTACCATTCGGCTGCAGAGGGGGAATCTGTGCCAAGAGCAGGAGGGTGGAGGGGAGCGCGGTGGAAGAGGGGACTTCTTATGGGTAAAGGTTATAGACAATGGCGCTATGGTGAAGCTTGATAAGCACTTATTAAGTGAAATAGCTGCTGATCAGGCTGGCTTGCTGGAGCCTATCACTGACCTTGAGCTGCGATTCAAACTGCTCTCCAAACCTCACCGGCTTGCCAGATTGGCCAGCTTGCCCCTGGGGTCGCCCGTGCTAGTGCGGTATGGCCAGACAGGAGAACTGGCTGATGCTGAGCTCCGTTACCGTGGCCCCTTAATGCGAGGGAGCGGCGCTGTGTATTTTGGGGTCCAACTAAAAggatCCGCAGCAGGCAGGGGCAGCAGTAATGGAAGTTACAAAGGCCACCAGCTTTTCACGTGCCCTGAACAGTGTGCCCTTTTTGTGTCAGTCAGCGATATCATACCATTTCGACCGACCCGAAGCAGCAGTTTTGGGGATAATGAACCTCaacaaactgaaataaacagaCCAAACCAGAACAACCAGAGTTCTAGTCATGTCCCAAATCCAGTTAGTGTCTTAGCACGTACAGCAGAATCAGTGCCATCTGACACTTGCTTACCTCTGCTGCAAGTGGGGCAGAGGGTCTGCTTCACCCTGGACAAGGTGCATCACTGGGGCACAGTGCAGTACTGCGGGCAGCTTCCTGGCCGTACATCGTCAGGAGGAGTGTATGTGGGAGTTTTGCTGGACAATCCAGTAGGAAACTGGAATGGTTACTATAAAAACTACAAGCTGTGCTCTATTCCTTCTCCCGAATTCGGCCACCTTCTTCCCCTCTCCAAAGTGGTTGCAGaaacaagATCAGAGCGCACAACTCCAGAAATCCCTCCACTTCCTTCTTCCAAAAACGTGCATCAGCCTTCTTCGCCCACACATAGCAGGCACCTCCCACAGACTACAATAACCACAAACCCCAGCCACAACCCTAGACTGCTGATAGAGCCTTCCATGCTAGCCATGGCTAAATCTGCTCTACAACCTACAACCTCATCAGCAGCTTCAAAAGTTGCTTTAAAACCTCCTCCTGTCCCGATCGTTAAATCCGCTGTCAGACCACCTCCTGTTCCACCTAATAAGTCacaagctccgcccctttcaCCCTCCACTGACCAACTTCATACTTCAAATGGATTTCATAATCCACCCTCTCCACTGATTGCAGAGAAAGCAGAAGCTAATATGTGGTTAGAGGTTGGTTCTATGGTCGAGGTGAATGACCCACCACTTTTCGGAGTCATTCGGTGGATTGGATACATCGGTGGAATTTCAGAACCAGTGGCTGGCATCGAACTGGACCAGGAGTTGACCGCTGCCACGGATGGCAACTACCTGGGTGAGCGTCATTTCCGTTGCCCCCCTAACAAGGGGCTGTTTATCAAACTGCGTAACTGTAGACGAGACTCCAGATTTCCTGTCCCTGAGGCACCGATCAATCAGGTGGAGCGCTGCAATTCGATTGCATTTGCAGAATGGGGCAGTAAGCGTGTGGAGGAGAACACACCACCCATGTTGGGTCAGGAGGCTCGGCAGTTGTATGAAGGCTTTAAGAAAGGCATCCAGGGCCATCTCAACTCCTGCTACCTGGATGCATCACTCTTCAGtcTGTTCTCCTGCTGCAGTTCAGTCGACTGGGTTTTGTTTTGGCCCTGCAACGAACATGGCCACCGAAGCAAAGATGCTCAGGAACTACTGCGCTGTGAAATTGTCAATCCTTTACGCAGGTTTGGATACGTATGTGCCAGTAAGACTATGGCATTGCGGAAGCTTCTGGAAGCTGAGACTACAGATGCAGGCTTTACTAATGAAGAGAAAGATCCTGAAGAATTCCTCAACAAGCTTTTCCAGCTCCTCCGGGTGGAACCACTTCTGAAGATTAGATCTTTGAGCCAGGAGCCACAGGAATGCCACATTTATCAACTTTTCCCTCCTACACTTCCCTGTCCATCTTCACCTATTCGTTCTCCGCTCTCGCCCtctttcactccctctctctctccaatcCCTCTGTCCTCACCCTCAGCTGGATTCATGAGGGTTGCCAGTGTGCAGACACTGCTGGAATCCTCCTTCATGCATTCTGGGCTTAAATTCACAGAGGCTCCATCCTGTCTTCCTCTGCTTATGCCACGCTTCGGTAAAGAGTTTAAGATGTTTGATGCCATTCTGCCATCCCTCACACTCGACATCACCGACCTTCTGGACGAGACACTTCGACAGTGTAGTATATGTCAGTCGGTGGCAGAGTGGGAGTGTTCACAGTGTTATGAGGATCTGGACATCACACCTGGCCAGTTAAAACAGTATTGCAACACCTGCAATGCCCAAGTTCACGCCCACAAGAAGCGCCAGACACACAAACCAGTTAAGGTCAGAATGCCCAAGGGCACGTGGGAGGGACCGGTTCATGGAGCTCGCCAGCAATTAACTCTCTTCGCTGTGACATGTATCGAGACCAGTCATTATGTGAGCTTCGTCAAGCACGGGCCCCTCCCTACCGACTGGCTGTTCTTCGACAGTATGGCTGATAGAGAGGGAGGGGAGAACGGCTTCAACGTGCCACAGGTGAGGGCGTGTCCAGAGGTGGGGCGCTACCTGAGCCTGTCAGAGGCAGAGCTCAGCCGCTTAGACTCCACCTTCCTGAAAGAGCCAGTCCGAAGATTGCTCTGCGATGCCTACATGTGCCTGTATCACTGTCCTGAACTGAGCCTGTATAAGTGACGTAAAGAGCTAGCAGTGATGCTTCTCCTGACACACAACCAACCTTACAGTGTTTCAAATACGACAGTGTTGCAAATCTTCTTTTGGTGTGTCACATGACGAAAGAGGACGAGCTGATTGTAGCGAACAGAATAAAACTGCAAACATAAATTGACAGTCAGAGGATTTTGAACACTATAAAGACTCTTTGGTTAAATCTCAAGCAGTGGGCTCATCTTAAATACAAAATCTAAAGGGTCGGTATAAGTGAactgagaaataaagaaacaatctTGATCTAA

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943064.2 True 3299 mRNA 0.50 16 6673138 6687356

Neighbor

gene id symbol gene type direction distance location
LOC113544317 LOC108260803 coding upstream 1901 6646391 ~ 6671237 (+)
khnyn LOC108260806 coding upstream 29724 6636928 ~ 6643414 (+)
si:dkeyp-74b6.2 cbln3,LOC108260982,LOC103033079,LOC103355776,LOC105919173 coding upstream 46004 6620904 ~ 6627134 (+)
LOC113544278 NA coding upstream 57493 6612151 ~ 6615645 (+)
LOC113544279 strn,LOC108260865,LOC108429273 coding upstream 93209 6543110 ~ 6579929 (+)
emc4 emc4 coding downstream 1164 6688520 ~ 6696420 (+)
lpcat4 lpcat4 coding downstream 11716 6699072 ~ 6710755 (+)
nop10 NA coding downstream 33489 6720845 ~ 6745254 (+)
LOC113544316 slc12a6 coding downstream 34439 6721795 ~ 6745250 (+)
tox4b tox4 coding downstream 59313 6746669 ~ 6759904 (+)
G393056 NA non-coding upstream 8089 6663754 ~ 6665049 (+)
G392682 LOC108261007,LOC103027614 non-coding upstream 190038 6482538 ~ 6483100 (+)
G392681 NA non-coding upstream 191641 6480949 ~ 6481497 (+)
G392679 NA non-coding upstream 193056 6478250 ~ 6480082 (+)
G392644 NA non-coding upstream 296878 6368327 ~ 6376260 (+)
G393113 NA non-coding downstream 33526 6720882 ~ 6745244 (+)
LOC113544411 NA non-coding downstream 89980 6777336 ~ 6779937 (+)
G393124 NA non-coding downstream 130947 6818303 ~ 6820739 (+)
G393140 NA non-coding downstream 156067 6843423 ~ 6895471 (+)
LOC117596334 NA non-coding downstream 167299 6854655 ~ 6862823 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 54456 6614859 ~ 6618682 (+)
lrba lrba other upstream 434060 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 762546 5831544 ~ 5910592 (+)
LOC113545745 ptprd other upstream 1816164 4463898 ~ 4856974 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other upstream 3272313 3359377 ~ 3400825 (+)
LOC117596330 NA other downstream 209637 6896993 ~ 6900940 (+)
G393467 slit1 other downstream 740262 7427618 ~ 7430910 (+)
G394251 NA other downstream 1571572 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 2448601 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 3260385 9947741 ~ 10050101 (+)

Expression


Co-expression Network