cilk1 (ick,LOC108261001,LOC108256381)


Basic Information

Item Value
gene id cilk1
gene name ick,LOC108261001,LOC108256381
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8154051 ~ 8168988 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943106.2
TAATGAAGGAGGCGGGGTTTGTCGGAATACGGATGGGCAGAGAGAACggtttgtttcctttttttgtttgttgtatgAGTCACTGGGGTAGTTGTTAGGATCGGCACAGCTTCCTGTTGTCACACTGAGATTTGCAGATGGGATTAGAGTAACGTTTTAACCAGAGACTGGACTGGCTACGATGCACGACAGGTGGTGGTGTGCACACGAAGACCATGACTTCAAGGCCTGTCACGCAACTCTGCTGTAACCACCGACCCTGGCTGCATTTGAGCAGCCATCGAGCAGGTGCCAGGCGCCACTGCGCGTCATGctgagaaagaaaacagcactATGAACCGATACGCTGCCCTCCGGCAGCTTGGCGACGGTACCTATGGCTCAGTCACACTGAGCCGCTGCCTGGAGTCTGGTGAGCTTGTCGCCATCAAGAAAATGAAAAGGAAATTCTATTCCTGGGAGGAGTGCATGAATCTCCGAGAGGTCAAATCCCTGAAGAAACTCAACCATGCCAACGTGATCAAGCTGAAGGAGGTCATCCGGGAAAATGATCAGCTCTACTTTGTGTTTGAGTATATGAAGGAGAACCTCTATCAGCTAATGAAAGAAAGAACACGCATGTTTCCTGAGTCTGCAGTGAGGAATATCATGTTTCAGATTCTACAGGGACTTGcctttattcataaacatgGCTTTTTTCATAGAGACATGAAGCCAGAGAATCTTTTGTGCATGGGTCCTGAGCTCGTGAAAATTGCTGACTTTGGACTAGCTCGAGAGATCCGATCTCGTCCTCCTTACACTGACTATGTGTCGACAAGATGGTACCGAGCTCCAGAAGTGCTTCTCAAGTCCACAAGCTACAGCTCTCCTATAGACCAGTGGGCTGTaggctgtatcatggctgaacTCTACATGCTCAGACCTCTGTTTCCTGGCTCCAGTGAGGTGGACACTATTTTCAAGATCTGCCAGGTTCTGGGAACTCCAAAAAAGAATGACTGGCCTGAAGGATGCCAGCTGGCTGCCTCCATGAATTTCCGCTGGCCGCAGTGCGTGCCCACCCGCCTAGCCACCCTGATTCCCAACGCCAGCTCCGAAGCCATTCAGCTGATGAGAGACCTGCTGCAGTGGGACCCTAAAAAACGGCCAGCAGCCTCCCAGGCCCTGCGCTATCCCTACTTTCACGTGGGTCAGATCCTAGGCGCACCACAGCAGATTCAGGACCAAGGACAAACGCAGCCTCCGCAACTCAGGCCTGACCCTCCTCCTCAGATCCCACCCCTCACCTTAGCTGATACAGCCCATCAACCCAAGCACCTGCCAGAGCCACCTAAAAGGCCAGGAAGGGCAGAGGTCAAGACAGACAGAGCAGTGCAGAGCCGCTTCCCTCTAATACATGACAAAGGCTTGCAGAGCAAGCTAACTCCAGAACCCGAGAATGCAAATTTGCCTAGCAGTTTATCGAAGCCTAAAGGAGGCCGGAGGAGGTGGGGTTATGTGACGGGGGTCTTAAAGGGAGAAGACTGGGATGATTATGAGGACACAGACACTACAACCACCACTCTGAACAAACCCATTTTCATCAGCAATGAAAAACGGCTACAGGGAGACAGCAGTGTGAACAGGCTGGGAAACGTTTTGGATTTCAGTCTGTCCAACGTCAGGAGCGAAGGaatcacaaatataaataacGTGCTGCCCTTCCAGGAGCCGTCCAGGACAGCATCAGCAAAACAGCATTACctgaagcaatcaagatattTACCAGGGTTGAGCACAAAGAAGCATGGAGCAGTTAATGCAGCAAAGGACTACAGTGGGAACATGTGGGAGGGCAGCAGTGTTCCTGTCGGAGGGACGCTATCTATCAGGGGCAACCATGGTACACATACAGGTGGATATGTGCCCTCAGTTTATAAGAAAGAGATTGGTTCAGCTGGCCAAAGAGTGCATCTCGCACCAGTTGATTCAACACTATCAAATTATGCAACGTGGAAATCAAGCAGGTCAAATAGTCACGTGGGCACGTCATCCTACGTGCCGTCTCCCACCAAGAGCACACCTGGCATGCGTTCTCGGCCTCCTCTGCAGCCCGTTCACGGCCGCACAGACTGGTCTGCCAAATACGGCCATCGCTAGGCCATTCTCAACATGAGCGCTGCTTTCTCTACCCTGTGATTTAAATATGTACCTTCTTATACAGCAATAATCTTTTACATTCCTCTGTGTAAATTGTTTGTGTaaagtttttatattaattttgcaAAATATGCACAAGAATCTCAGTGGTAGTGTCAGTGTGTCTTCTCTTTTATCCTACATAATCTCTGCAAAAAAGTGTATgcattaatatgtatatatagccAGTACATTTGGTAATATTAAAGgtctttattttacatttttggattTGTATGTGTAGATGTGTCCTTTGTCAGTTTTCCTCCTCAAACTGTTtcttttctatcattttttttaaagcaaaaactttGTCTTTGCTCCCTAAAATGTTATGTATATTTGGCAATGTTAGTTAACACAGTGTTATTTGATTGATTACTGACATGCTTGTTActacctttaaaatgattaaattttgaatacatttaaaatataaaaataaaaaactttaatgACA

Function

symbol description
ick intestinal cell (MAK-like) kinase

GO: NA

KEGG:

id description
K08828 ICK; intestinal cell (MAK-like) kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943106.2 True 2641 mRNA 0.47 14 8154051 8168988

Neighbor

gene id symbol gene type direction distance location
LOC113544397 mark1,LOC108260538,LOC108414040 coding upstream 28613 8067433 ~ 8125438 (+)
efemp1 efemp1,LOC108437849 coding upstream 102831 8017212 ~ 8051220 (+)
LOC113544437 xpo5 coding upstream 175432 7958883 ~ 7978619 (+)
LOC113544435 LOC108260879,LOC108437854,LOC105900835,LOC103357730 coding upstream 518004 7620100 ~ 7636047 (+)
LOC113544382 LOC108260553 coding upstream 734416 7413196 ~ 7419635 (+)
vit vit coding downstream 38682 8207670 ~ 8237492 (+)
si:ch1073-291c23.2 LOC108260910 coding downstream 71651 8240639 ~ 8252667 (+)
ddx21 ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728 coding downstream 94991 8263979 ~ 8279460 (+)
LOC113544354 LOC108260789,LOC108260790 coding downstream 120303 8289291 ~ 8301011 (+)
LOC113544353 LOC108260790,LOC108260789 coding downstream 160677 8329665 ~ 8350126 (+)
G394156 NA non-coding upstream 273 8152460 ~ 8153778 (+)
G394155 LOC108413271 non-coding upstream 1663 8151403 ~ 8152388 (+)
G394153 NA non-coding upstream 5019 8148554 ~ 8149032 (+)
G394150 NA non-coding upstream 7934 8145443 ~ 8146117 (+)
G394147 LOC108260699 non-coding upstream 11458 8141847 ~ 8142593 (+)
G394229 NA non-coding downstream 65691 8234679 ~ 8235160 (+)
G394260 NA non-coding downstream 110546 8279534 ~ 8280204 (+)
G394262 NA non-coding downstream 116018 8285006 ~ 8285339 (+)
G394291 NA non-coding downstream 251694 8420682 ~ 8440437 (+)
G394306 NA non-coding downstream 297281 8466269 ~ 8466602 (+)
G393467 slit1 other upstream 723141 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1253111 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1535369 6614859 ~ 6618682 (+)
lrba lrba other upstream 1914973 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 2243459 5831544 ~ 5910592 (+)
G394251 NA other downstream 89940 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 966969 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1778753 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1931949 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 2030335 10199323 ~ 10239199 (+)

Expression


Co-expression Network