chs1 (chs2)



Basic Information


Item Value
gene id chs1
gene name chs2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8378414 ~ 8389447 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026943138.2
ACCAGTCTCTGGACGTGACTTCATTTCAGACTGTTCATGGAGTAGCAGAACAACATGGAGGACCTGAGGAATAGGGGCcgaaagagagaggggaggcACAGGGACACATGGGACCCATTTCAGCTGAATCCTATTGGagctgagaaagaaaagaagagaacatGTTTGATGTTAATGCAGCACTTCATGGCAGTGGTTGTAGGTCTATTGGTCTTGACCAGTGCCGTCATCAGCAAGGGTTCTCTCCTAACATTGGCCACACTTTCCAGTCCAAATTCCCTCCGGAGTTCTACGGATAGGCAGTTCTACACGCTACTGCTGATGTGTGCCCTAGTAACACCCAACCTGTTGGTGTTCCTCAAGTGTCTGTGGAAATGTGCCTTCAAAAGCTTTGTTCCACCCAGCAAGAAAACCATGGCGATTatttcagtaATTGAGATCCTAGTGGCACTGGGGACCTCGATCTTGGTTCTGGTTGTCATGCCTCAGTTTGATGTGCTCACCAACCTTTTCATATCTGGAGGAGTCTGCATTGGCACTGCCTTCCTTCATGCTGTCCTTCGTCTTCAGCACCAACGCTGGATGATCATCTTTCCTATTTGCTCCATTATTCTAGTGCTCACTGGCTACAGCCTGCTGGCTGCCGATTACAATGTGCGAATGACTTCTTATCTCCCAAACCAAGGGAAAGACTGTTACTACTATGTTGGCATTGCTATATTGGCTTCACTGCTTATCTCTCTTAACTGGTGGGAGAATTCTCTACAGGCCAGCAATAATATTCAGGATATGCTAGCTGAGTTAGATGGCTTCAGAGATTCTGTCTTCATGATCACCAGTCTCATGAGGATTGCTGTCACTGTTGGGGTGTACTTCCTTTATTATTGCTTAATAGCTGAGACCCGCATCAACTGGAATGCTTTCACAGAAATTACAGATAATACCCTTGAGATAGGCCTTGGGGTGTTCTTCCTTCAAGCCTTCTGCTCTGCCGCCTGCCACTGGTTTGGGGTTGTGGCCTGCAAGATCCATGCCGTGAGGATGAGCTTTGCCATGCCAGTCTTATTGACAGGCCCTGTTACACTGATTGTAGGCATAACACTTTTCCTGACTCAAGCGAGCACCTTGGATGTGGCACCAGAGACTTCTTACTTCTCTGAGGTGACAGACAACTACACATCAATTGACAACCCATTTCTGGACTTTTGCTCTGGTCTTGCGAATATGAAGGTCTCTAACAGCACTCCACTGATCCTCCTGGAACTTTCCAAGAGTATCTGCAGAACAACACTGAATAGCCATTATGCAGTTTGGCCTTTCTCCATGCTTGCGCTTGAGGGGGTGTGCATGTGGCTCGGGTTGATTACATGCACATATTATGTTTGGAGCATGAAGGTGCCACGTATCGAGCGGACATCCCAGCTCTTTGTGCGGCGGCTGTACGAATCTGCTTTCATTGATCAATCTCTACTTCTAAACACCAAAATGAAAGTGAAGAACCCAGAAAGCTTTGAGGATATAGAGAACTGTGTCATATATCTCTGTGCAACAATGTGGCATGAAACATATGATGAGATGCTTAAGATCCTCACCTCAATGTTCAGACTGGACAGGTACAGAGGTGATCCAAAAGAAGAACACAAAGATTACTTTGACTTtgaatgccatatttttgtcgATGATGCCTTCATGAAAGATAAAGGCACTGAGAAAAAGATGGTCAATTCATATGTGGAAGATCTAATAAATGTGGTCATGGAAGTATACAGAGTATTCACAAACAAAGAGCCAGATGAAGTCTCTATCATTGAAAGTCCTTATGGTGGTCGGATTGCATTTGTGCTACCAGAGGGAAATACGTTATTTGTCCATCTCAAGGACAAAGGACTAATACGAAACAAAAAGAGATGGTCACAGataatgtatatgtattatCTTCTGGGTTGGAAAGGTTACATAGTGAAAAATCCCCAAAAAATCACTAGACAGAACAATGTATGTCGTGCAAGTCTCATATCACTGGATGGAGAAGCTTACCTCTTACCAACCTTTGATAACGATAGTAAAAGGAAACACATATCAGATGACAACACGTATATCTTGGCTTTGGATGGAGACACTGACTTCCATCCCTCTGCTGTGATTTTACTGGTTGATCGTCTTCGAATGTATGCTAATGTAGGTGCTGCTTGTGGAAGAATTCATCCAACTGGAATGGGGCCAATGGTGTGGTATCAGAAGTTTGAGTATGCTGTGGGTCACTGGCTACAGAAAACAGCAGAGcatgtgtttgggtgtgtgctTTGTAGCCCTGGATGCTTCAGCCTGTTCAGAGGGTCAGCTCTAATGGATGACAATGTGCTGAAACGATACACCACCAAGGCCACCAGGGCTTCTGAGTACGTCCAATATGACCAAGGTGAGGATCGCTGGCTTTGCACATTGCTTCTCCAGCAGGGATGGAGAGTGGAGTACAATGCTGCCTCGGATGCTTACACTAATTCTCCTCAAGAATTTAAGGAGTTCTACAACCAAAGGCGCCGCTGGGGTCCCTCTACTCTTGCAAATACTTTAGACCTTCTACACAGTGGAAAAGAAACTGTAAAAAGGAACTCTTCCATATCTATGCTCTACATCTTCTACCAGATCTTCACTGTGGCTTCTTCTATTCTTGGACCTGCTTCTGTCACCTTGATGGTAGCTGGGGCTTTCCAGTTTGTGTTTAGTATCCCAGGAGACCTGTCCATTATCATAGCTGTCATACCACCAGTTGTTTACATGTTAATTTGTTTCTTCACCAAATCCAACTTCCAGATTACCATCGCTGCCATTCTTAGTGTTTTGTATGCATTTCTGATGACAGCATCTTTCTTCTCCATTATTGGTGACATGGTGAAGGAAGGCACATTCATCACCCCTACTGGGATATTTCTGGTGTCCATGGCAATCTTGTACTTGGTCACAGCAATACTTCATCCCCAGGAGTTTGGCATGATTGTCTACGGTCTCATGTACTTTATATGCATCCCTAGCGGTTACCTCCTCCTTACTATCTACTCCTTGGTCAACATGAACAATGTCTCCTGGGGCACTCGAGAATCCAACAAAGAGAAGGAGCAGAAGAAGCACGTTGGAATTTTGTGTAACCGCAACTGCAAACTCTGTTGCTGGGATGTAAATATCCAAGTCACCCAAGAAACCGAAAACCTGATGCTCCAGCAAATCCAGCAAGCAGTTAATCCAAATGGTTCACCGGACAAAACAGAGATGACTGTACAGGGTGCTGAAGAAAGTTTAAAACACTCTCAAACTGAAAATCTTCCTACTGAAAACAACAGAGATGTTGCATTGAGGATGAGAGACATCAAGCATCTGTCCAATGACAAGGAACAAGATACAAAATCTGTGAACAGTACAAGTGACATCAGCATGGATCAAAAAACTTTCACAtcatatgatgatgatgaggaggaggaggatgactTGGATGCATATGATGATCAGAAAGAGCAAGAAAAGGAAGTTGTCCCTAACAGCGACTGGGTTGGACCAGTGAAAACAGTATTCCTGAGGAAGCTTACCTATGCAAATCTCAAGAGGAACCTCCAGGAGCAGATTAGATACACCCTCAGAAATAAGGACCAGGAAGACCTTTGTGAAGAGCTGGTGCTCATGCTAACTGACACTCTCAATGAAGAGATAAGGGACAAAGTGGGCCCAGAGGATATTTTGTCAGACAGCCAATTGGAAGAACTACAGGATGCACTTAATGAGTCAGCAAGGAGGATCCTGAAGACCAACCGCATGCAGATCAACCGCATGAAAAGGCTGGAGGCAAGAGTCAAACGAGCTATTGAGAGAACCCTGGTGGCCCCCCAGGTTGTGAAACTGTCTGAGGATGAGACAGACTTCTGGAATAAACTGATAGAGCGCTACCTGCAACCCATAAATGATCCCAAAAGCCATCTAGAGCAAGTGGAAAGGGAACTGAAATCCCTTCGGAACAAGGCAGTATTTCTGTACTTTATTGTGAACGTCTTATGGGTTGTGGccacattttttcttcaagCCATTGGCAGTGACATTATCAGCATCAAGATTCCTAAATATTTGCCAAATGGCAGTTTGGCTGATGAACCTCTGAAGGTGGAACCTCTAAGTTTAATGTTCCTGCTGTCTTTTGCCATACTTCTGTTGATCCAGTTTCTGGCTATGCTTTACCACAGAGTGTACACCTTGATCCACGTGTTAGCCTACAGAAGCTCGGAGAAGGACTACGCAGAAAAGGATGCAGATGAGGAAGACTTGATCTTGGAAAACCAAAGTACGAATGACCTTGTCATAACCGGTGATGACCTGTGATGAAGAGATGAGCGATTtgagtatatttatatttacttatgaCTGCACACTTGTAATGACACTTTCAGGGTACAAGTTTTATTGTActacaaacacaaatgaaaatccagctgagaaaaaggaaaaataatgcaATGACTCAAGTATGTGCAATAAatactgtgtactgtatttatactTTGATTCTTTTATGGTGAAGGCAACAAAGGAAAGCTGTAGCTGAAAGATTTATCTCTGGAGTGGTATATCtatagtgtttaaaataaacagtcaaagtaatttttatttaaaaaaaacattcaagctTCACTGAAAGAACTGAACTAGTCAACGAATAAGAAAGCTGTAACATCATATAATCATTTACATGCAAGCGCTACCAGCTCTTGTTTGTGACTAGACTTGCCTTATCGgtgctgtaaactgtaaatcaAAATCACAGCTTCCTAAAAGTGGTTTGTCATCATTATAATGGTACAAGTTCACTCAAGGAttgggagggtgtgtgtgtgcttcatttTTACTGCCTAATTACAGTCTATTTACAAGCCATATGCCAAAGTacaaaaatgctgtaatttcTTCAGTTAGTTTAGTACCTAGTTAGACCTAGTAATGTAATCCTATAAactgtgtgatattttttttatgatcagTACCAAATGTAATCATTATCTGGCTCTCTAAGTGTTGTGgtagtttttgtattttaattaaatggttCCATTGCATGCTGTGTAAAAGA

Function


symbol description
chs2 Predicted to enable chitin synthase activity. Predicted to be involved in cuticle chitin biosynthetic process. Predicted to be active in cell periphery and cell septum. Orthologous to human HAS1 (hyaluronan synthase 1); HAS2 (hyaluronan synthase 2); and HAS3 (hyaluronan synthase 3).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107565902

GO: NA

KEGG:

id description
K00698 CHS1; chitin synthase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026943138.2 True 5107 mRNA 0.43 19 8378414 8389447

Neighbor


gene id symbol gene type direction distance location
LOC113544353 LOC108260790,LOC108260789 coding upstream 28288 8329665 ~ 8350126 (+)
LOC113544354 LOC108260789,LOC108260790 coding upstream 77403 8289291 ~ 8301011 (+)
ddx21 ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728 coding upstream 98954 8263979 ~ 8279460 (+)
si:ch1073-291c23.2 LOC108260910 coding upstream 125747 8240639 ~ 8252667 (+)
vit vit coding upstream 140922 8207670 ~ 8237492 (+)
LOC113544399 sult6b1 coding downstream 11347 8400794 ~ 8410541 (+)
slc30a6 slc30a6 coding downstream 25026 8414473 ~ 8437196 (+)
LOC113544248 LOC108260666 coding downstream 85437 8474884 ~ 8486535 (+)
LOC113544387 sptbn1,LOC108260989,LOC108414519,LOC105890945 coding downstream 106629 8496076 ~ 8583090 (+)
slc12a10.1 NA coding downstream 220020 8609467 ~ 8623393 (+)
G394262 NA non-coding upstream 93075 8285006 ~ 8285339 (+)
G394260 NA non-coding upstream 98210 8279534 ~ 8280204 (+)
G394229 NA non-coding upstream 143254 8234679 ~ 8235160 (+)
G394156 NA non-coding upstream 224636 8152460 ~ 8153778 (+)
G394155 LOC108413271 non-coding upstream 226026 8151403 ~ 8152388 (+)
G394291 NA non-coding downstream 31235 8420682 ~ 8440437 (+)
G394306 NA non-coding downstream 76822 8466269 ~ 8466602 (+)
G394373 NA non-coding downstream 271249 8660696 ~ 8661230 (+)
G394520 NA non-coding downstream 463097 8852544 ~ 8852767 (+)
G394527 NA non-coding downstream 523433 8912880 ~ 8913084 (+)
G394251 NA other upstream 119112 8258928 ~ 8259302 (+)
G393467 slit1 other upstream 947504 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1477474 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1759732 6614859 ~ 6618682 (+)
lrba lrba other upstream 2139336 6039414 ~ 6239078 (+)
LOC113544250 NA other downstream 746510 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1558294 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1711490 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1809876 10199323 ~ 10239199 (+)
G395242 NA other downstream 2117143 10506590 ~ 10516369 (+)

Expression



Co-expression Network