slc30a6 (slc30a6)


Basic Information

Item Value
gene id slc30a6
gene name slc30a6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8414473 ~ 8437196 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943189.2
AGTGTCTCTGAAACCCAGCGAGAAGAAGCAGCGCTCCAAAATGGCGATGGACGGTATGTCCACGTCTGCATCAGGACTACCATACCATCATGTTTCCGACTATTATCCCAGGAAACTCGGTCCGAAGCCGGACGTGGTGCCTTCTGGTGTAACCGAGAGGAAAACCGGACCTGCAGATAAACCTGACATGGTCTCAGTGGACGTTATCAACTTCAAGGACTCGGATACACCAGTACACAGGAAGAAACTAGAAACAGACACATATGTTCTGggcaccatacaccCCTTCCGCAAGTCACACAAGTCCGTCTTTAGCAAGTTCATCCAGGAGTTCAACTTAGTCACTTCAGATAGACGGTCGTGGAAGATCCTACTATTTGGGGTGCTGAATATAATCTGCACAGCTTCTCTGCTGATGTGGTGCAACTCCACAAACAGTATGGCCTTAACAGCCTACACATACCTCACCATTTTCGATCTTTTCAGTTTGATTACATGCCTCATAAGCTCCTGGGTGACCATGAAAAAACCAAGTCAGGCCTTTTCATTTGGTTTCGAGCGCTTTGAGGTGCTGGCAGTGTTTGCCTCTACAGTGCTGGTTCAGCTGGGAGCTTTGTTCATTCTGAAGGAAAGCGTGGAACGTTTCATGGAGCAACCAGAGGTGCACACGGGGCGCCTTTTAGTCGGGACCTTTGTGGCTCTGTTTTTCAACCTGCTGACTCTCCTTTCAATCAAGAACAAGCCTTTTGTCTATGTTTCTGAAGCTGCCAGCACCAGTTGGCTCCAGGAGCATGTGGCTGATCTGAGTCAAAGTCTATGTGGGATCGTCCCAGCACTGAGCAGCGTTCTTTTGCCACGAATGAATCCCTTCGTCCTTATCAACCTGGCTGGAGCTTTTGCTCTCGGAATCACTTACATGCTCATCGAGATTAAcAACTATAACGCAGTGGACACTGCTTCTGCCGTAGCGATCGCGCTCATGACCTTCGGCACCATGTATCCCATGAGTGTGTACAGTGGAAAGGTCCTTCTCCAGACTACTCCTTCCCATGTCATTGGACAGCTTGACAAAGTGCTTAGAGAGGTCTCTACACTGGATGGAGTTTTGGAAGTCCGGAATGAACACTTCTGGACAATAGGCTTTGGCTCTCTGGCCGGCTCCGTCCATGTGCGCATCCGGCGGGACGCCAACGAGCAAATGGTGCTGGCTCATGTGACCAATCGCCTCCACACACTTGTCTCCACACTCACTGTACAGATCTTCAAGGACGATTGGACGCGTCCATCCTTGTCCACTGGCCCTCTCAACCTCTCTGATATCGCAATTTCATCTGGAAAGCAACTTGAAGAACCGGAGCCACTGACTTCCACTCCCTCTAAACTGAGCAGTCCGCCGCCTGAGTTCTCCTTCAACACGCCTGGCAGGAATGTGCGGCCTGTTTTACTCCCAAATTTTCATCAGCAACGACCGTACAACTTGGGCCTTGCATATGGATCTTCTCCGTACAATACGATGCTCAGTCAGGGCTTAACGCAGCCAGGAAGCAGCCTAGGTGTGGGTTTGGGGACAGGACCAAGAATCCCCTCTATTCAGAGCTACAGGACTTCTTTTAGTGCAGCTCCACAGATATACGGAAGCAATCTGCTGCCTTCACAGAGCAGTCAGTATAAACACTGATGCACTGTCCAAGTTGGACTAAAGCATGGACTAAGAGCAGGCTGAGCTGCAGAGGACCATaactattatatttaattaataggACCAACAGTCTTCTCTTTAAAGGGTTTTCTAATTGCATTGTCCTTTTTGTACTGTTAAACAGATCGCagatgtattaaaaatatatgtaatatgttgtttTACCACTGCTGTTGCTTTAAGAGGGTTGTGTTATAAGAGACCATGATttattgtaacttttggactCCACGGGAAGTGAATCAACTTTTGTGTTAAGAAGACTTGGGTGTTTTATGACTTGATCAGAGGACAGGTAATTGTCTGCCCAGAAATGCTTGAATACAAGCAAATATCtgtattgcatttaaaaaataagatattGAATTACTGTTGAAGCATCATACGTTGTAAGAGGATTAAATTTTACCCAGTAACTACAGAAATCAATTACTCGTATCAAGTAAAATAGTAAACTAC

Function

symbol description
slc30a6 Predicted to enable zinc ion transmembrane transporter activity. Predicted to act upstream of or within zinc ion transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Orthologous to human SLC30A6 (solute carrier family 30 member 6).

NR:

description
PREDICTED: zinc transporter 6

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K14693 SLC30A6, ZNT6; solute carrier family 30 (zinc transporter), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943189.2 True 2158 mRNA 0.47 15 8414473 8437196

Neighbor

gene id symbol gene type direction distance location
LOC113544399 sult6b1 coding upstream 3932 8400794 ~ 8410541 (+)
chs1 chs2 coding upstream 25026 8378414 ~ 8389447 (+)
LOC113544353 LOC108260790,LOC108260789 coding upstream 64347 8329665 ~ 8350126 (+)
LOC113544354 LOC108260789,LOC108260790 coding upstream 113462 8289291 ~ 8301011 (+)
ddx21 ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728 coding upstream 135013 8263979 ~ 8279460 (+)
LOC113544248 LOC108260666 coding downstream 37688 8474884 ~ 8486535 (+)
LOC113544387 sptbn1,LOC108260989,LOC108414519,LOC105890945 coding downstream 58880 8496076 ~ 8583090 (+)
slc12a10.1 NA coding downstream 172271 8609467 ~ 8623393 (+)
nvl nvl,LOC107558213 coding downstream 225048 8662244 ~ 8685925 (+)
trnal-cag_18 NA coding downstream 259001 8696197 ~ 8696279 (+)
G394262 NA non-coding upstream 129134 8285006 ~ 8285339 (+)
G394260 NA non-coding upstream 134269 8279534 ~ 8280204 (+)
G394229 NA non-coding upstream 179313 8234679 ~ 8235160 (+)
G394156 NA non-coding upstream 260695 8152460 ~ 8153778 (+)
G394155 LOC108413271 non-coding upstream 262085 8151403 ~ 8152388 (+)
G394306 NA non-coding downstream 29073 8466269 ~ 8466602 (+)
G394373 NA non-coding downstream 223500 8660696 ~ 8661230 (+)
G394520 NA non-coding downstream 415348 8852544 ~ 8852767 (+)
G394527 NA non-coding downstream 475684 8912880 ~ 8913084 (+)
G394555 NA non-coding downstream 570678 9007874 ~ 9008080 (+)
G394251 NA other upstream 155171 8258928 ~ 8259302 (+)
G393467 slit1 other upstream 983563 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1513533 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1795791 6614859 ~ 6618682 (+)
lrba lrba other upstream 2175395 6039414 ~ 6239078 (+)
LOC113544250 NA other downstream 698761 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1510545 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1663741 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1762127 10199323 ~ 10239199 (+)
G395242 NA other downstream 2069394 10506590 ~ 10516369 (+)

Expression


Co-expression Network