casq1b (LOC108260939,LOC108442777,LOC106577953,LOC100194596,LOC107726186)


Basic Information

Item Value
gene id casq1b
gene name LOC108260939,LOC108442777,LOC106577953,LOC100194596,LOC107726186
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7000205 ~ 7032730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943225.2
aaaaggaCGTGTGAATTAGCAGTCCTGCTCTTTTCAGGGCGGCAGACACACGGACTGGACCTTGTTCCTAACTGTTTATGTGACCTGCCGTTAggaacaaagcaaaaataaagaaaaaaataaggaaactATTTTGATTTTTAGTTCTGATTGAAGTGTCGGGAACATGAAGTGGGGCTTGTGGCTTGGAGTCGTTCTCCTCACCTGTGGAATTCTGTGTTGGGGAGTAAAGATCCTGGATATCCCTGAGTATGATGGCAAGGATCGAGTCCATATACTGACCAACAAAAACTACAAGGCTGTGATGAAGAAGTACGATGTCATGGTGATCTACTATCACAAAGCTGTTGGGGAAAACCACATGGCCAAGAAGCAGTTTGAAGTGGAAGAGCTCGCTTTGGAGCTTGCCGCCCAGGTGCTTGATGACTTCAATGATGAGGATATTGGATTTGGGCTGGTAGATGCGAAGAAGAATGTTGCTGTTGCCAAGAAGTTGGGTTTGGATGAAGTCGACAGCATTTACATCTTTGCTGATGACGAGATCATTGAGTATGATGGAGAGATGGCTGCAGAAACATTGGTGGAATTCCTCTATGATGTTATCGAGGATCCAGTGGAGATCATTGACAATGAAGGAGAGCTAAGAGGCTTTTTTAACCTAGAAGAGGATATCAAGTTGGTGGGATACTTTAAGAATGAGAATTCCCGACACTTTATTGAATATGATGATGCCGCTGAAGAGTTCCATCCCTTCATCAAGTTCTTTGCCACTTTCAATTCAAAAATTGCCCAACAACTAAAACTGGAAATGAATGAGGTTGATTTTTATGAGCCCTTCATGAGTGAGCCTACCACAATCCCAGGCAAACCTTACACTGAGGCTGAGCTGGTTGACTACATCGAGGAGCATGAAAGACCAACTCTAAGAAAACTCGAACCCCACAGCATGTATGAGACCTGGgagGATGACATTAATGGGCAACACATTGTAGCCTTTGCTGAGGAATCAGACCCTGATGGTTTTGAATTCCTGGAGATTCTGAAGGAGGTAGCCCGTGAGAACACAGAAAACCCTGATCTGAGCATTATCTGGATCGACCCAGACGACTTCCCCCTGTTGGTGCCCTACTGGGAAAACACTTTTGGCATTGACCTTTCCTCTCCACAATTTGGTGTGGTGGATGTGGAGGATGCTGACAGTGTTTGGATGGAGATGGATGATGAAGAGGACATGCCTACTTCATATGAGTTGGACACCTGGATTGAGGATGTGCTGGCGGGCAAAATTGACcctgatgaagatgatgatgatgacgacgacgatgatgacgacgatgacgacgatgatgatgatgatgagcgaCGGCGGCGCGGCGGCGGCGATGCGGCGAGCGACGGCGGCGATGATGGCGATGATGGCGGCGGCGGCGATGATGGCGGCGATGATGGCGGCGATGATGATGGCGGCGGCGATGGCGATGGCGATGGCGATGGCGGCGATGGCGGCGGCGGCGATGGCgacgatgatgatgatgatgatgacgacgatgatgatgatgatgatgatgatgacgacgacgacgacgacgaTGACGACGATGACGACGATGAATAAATTCCTTCCATCATCTCAGGGATTTCACCATGTTGACTGGCACTAGCCCGAATACTTTAATGACCGTGAATGTGAAGTTCAGATCTAAGGCTTCAGCGTCCACACATCACGGTcatcacttcctggttttgGAAGCTTTTTGCCTTTCTAAGGCAGGAATCCATCTGAATCCCTTGACACTTCAGGGGCTCATCAGCATTATTTGACTGGTCTTTTTATAATGCCCTTGTGGTGTTCCCTAACTTTGTAGATTATCTTCTTGTCCAAGTCCAAATTCTCAATGTTGCTTGTTGATGCTTATTTAAGAGCAttctctgaaataaaaaaaaaggggacaAGCCTGAGGTTATTCAGCTGTCTAAAAGAGCTACATAGCTACAAAGTTTTAGTAATATTATGTGTATATGCATTGTCTTTTTATATGTGCACCCTTATGAGGTTAATATTTCTTTGCCATGGAGGTGGGTTTCTTACCCTGCCATTTTTTAAGAAGAAGCTATTTTGATTGGGTGAAATTTTCGATTTCAATATACTAAAGTGAACATATActaaaccaaaaaaatattattattagcattatttttgttattttttcaggAGGAACGAGGCTGTATTCACGAAAATGTCTTAATTTGACCATTTCTTGTGGAAAGAAGTAGATGTACAACAGAAGTAAAAGAGCAGATTTTGTCCAATGTTGGAAACATGTAAAGACAAGAAGAAcgagaaacaaaaaca

Function

NR:

description
PREDICTED: calsequestrin-1-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23468 CASQ1; calsequestrin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943225.2 True 2353 mRNA 0.44 13 7000205 7032730

Neighbor

gene id symbol gene type direction distance location
zgc:92594 LOC108260947 coding upstream 53482 6939707 ~ 6946723 (+)
sb:cb1081 NA coding upstream 62832 6926560 ~ 6937373 (+)
supt16h supt16h coding upstream 223861 6762469 ~ 6776344 (+)
tox4b tox4 coding upstream 240301 6746669 ~ 6759904 (+)
nop10 NA coding upstream 254951 6720845 ~ 6745254 (+)
LOC113544234 LOC108260940 coding downstream 1549 7034279 ~ 7041912 (+)
LOC113544270 LOC108260482 coding downstream 268909 7301639 ~ 7306530 (+)
si:ch211-63p21.1 LOC108260971,LOC108437862 coding downstream 368639 7401369 ~ 7409804 (+)
LOC113544382 LOC108260553 coding downstream 380466 7413196 ~ 7419635 (+)
LOC113544435 LOC108260879,LOC108437854,LOC105900835,LOC103357730 coding downstream 587370 7620100 ~ 7636047 (+)
G393150 NA non-coding upstream 50897 6944819 ~ 6949308 (+)
G393140 NA non-coding upstream 104734 6843423 ~ 6895471 (+)
G393116 NA non-coding upstream 118679 6877171 ~ 6881526 (+)
LOC117596334 NA non-coding upstream 137382 6854655 ~ 6862823 (+)
G393124 NA non-coding upstream 179466 6818303 ~ 6820739 (+)
G393293 NA non-coding downstream 22598 7055328 ~ 7061670 (+)
G393301 NA non-coding downstream 53067 7085797 ~ 7086015 (+)
LOC113544421 NA non-coding downstream 100366 7133096 ~ 7151569 (+)
LOC117596340 NA non-coding downstream 122647 7155377 ~ 7163031 (+)
G393351 NA non-coding downstream 145090 7177820 ~ 7245118 (+)
LOC117596330 NA other upstream 99265 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 381523 6614859 ~ 6618682 (+)
lrba lrba other upstream 761127 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 1089613 5831544 ~ 5910592 (+)
LOC113545745 ptprd other upstream 2143231 4463898 ~ 4856974 (+)
G393467 slit1 other downstream 394888 7427618 ~ 7430910 (+)
G394251 NA other downstream 1226198 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 2103227 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 2915011 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 3068207 10100937 ~ 10116924 (+)

Expression


Co-expression Network