si:ch1073-291c23.2 (LOC108260910)


Basic Information

Item Value
gene id si:ch1073-291c23.2
gene name LOC108260910
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8240639 ~ 8252667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943233.2
tcttctcctcttctgtaTTTGCAGTGAACTTTTGGAAtggcacacacatatacacacgcaatCCCAAACATGGTGTCTCAGTCTCCACCCCGTCCTCTACTCGTCCCACTTTTTACCATCCCCCTTTGCCCcctcccctctttgctgttgtGAAACACTGTAAAATCTACGCGCCTCACCCACAGCCAGTTGAAGAGATGGACACAAATGCAGGTAGTGAGCCCATGCAGGAGATTAAGGGACCAAGCACACAAACTGCCGGTGGCGCTAAACCTCTGCACCGCTTCCTCAGAGGAGAGCCAAGATCTGTTGggATTGTGCTGTTGTTCCTGGGCTTGTGTATGTTCTTGTTTGGGATTCCTCTGAAAGGAGACATTATGGAAACATCAGCAGAAAACTATAGCCCCTTTTGGCTGGGCATCTTGTACTTTATTTGTGGTGTTCTGTACATACAGTCAGAACGCAACACCACGAAAAAGATGGTCACAATTAGTCTTGTGTTTAGTATCCTTGCAATACTTGGGACTTTAGTTGGTGCAATAATTTTCAGCAAAACTTTAGCCTCACACTCTTATCATTATATGATGTATCCAGAGAATTTCAACGACAACGAAACACAAGTGACCGTGGAACATTATATGCAGCTCTACAGCCTGGAAGCCGTGTTCCTGTTCCACAGCTTGGTGGCGGGAGTGATCCTCATTGCCATGACTGTGTTCGCCCGTCTAGCACTGCGCTCAACTCATACACAGATGTTCGTGGTCATGCGTTACCCACCTTCAGCAGAGTGAGGCCTCTTTAGAGAGACCTTGGGTGAACTCCAAACGCTAGTCTGTGATAGAGAGCTCATTAGAATTCATTCTAACAAGGAGGTGTCGTcaagaaaactgaaaagaacAAGTTACTTGTGACAGTGTACACAGGAAACAAATTGAAAGCCGTTTGCTTAATGGCTAATTAACTTAGCTCTTCAGGCCACACTGTATGATTGCTAGAAATAAAGACTGTGAAAAAAATCTTGTTAGAATGGGATCTCTATGCTCTAGCGTTTGGGATGGAGCATACTCATATCTTACCATTCTTTTCCTTCTTGgcataaaaaaacaactgaaatgtGAAACATTTCACTATAGcatacacataaacactgtactagttcatatatggaaatgtataTTGCCAAATaatctttttaattttgtattgaaTAAATCTAACAAAACGATGATGACGTTTTGATGTAAACAACCACTGActataataaatgcatttttgtatA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943233.2 True 1279 mRNA 0.42 7 8240639 8252667

Neighbor

gene id symbol gene type direction distance location
vit vit coding upstream 3147 8207670 ~ 8237492 (+)
cilk1 ick,LOC108261001,LOC108256381 coding upstream 71651 8154051 ~ 8168988 (+)
LOC113544397 mark1,LOC108260538,LOC108414040 coding upstream 115201 8067433 ~ 8125438 (+)
efemp1 efemp1,LOC108437849 coding upstream 189419 8017212 ~ 8051220 (+)
LOC113544437 xpo5 coding upstream 262020 7958883 ~ 7978619 (+)
ddx21 ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728 coding downstream 11312 8263979 ~ 8279460 (+)
LOC113544354 LOC108260789,LOC108260790 coding downstream 36624 8289291 ~ 8301011 (+)
LOC113544353 LOC108260790,LOC108260789 coding downstream 76998 8329665 ~ 8350126 (+)
chs1 chs2 coding downstream 125747 8378414 ~ 8389447 (+)
LOC113544399 sult6b1 coding downstream 148127 8400794 ~ 8410541 (+)
G394229 NA non-coding upstream 5479 8234679 ~ 8235160 (+)
G394156 NA non-coding upstream 86861 8152460 ~ 8153778 (+)
G394155 LOC108413271 non-coding upstream 88251 8151403 ~ 8152388 (+)
G394153 NA non-coding upstream 91607 8148554 ~ 8149032 (+)
G394150 NA non-coding upstream 94522 8145443 ~ 8146117 (+)
G394260 NA non-coding downstream 26867 8279534 ~ 8280204 (+)
G394262 NA non-coding downstream 32339 8285006 ~ 8285339 (+)
G394291 NA non-coding downstream 168015 8420682 ~ 8440437 (+)
G394306 NA non-coding downstream 213602 8466269 ~ 8466602 (+)
G394373 NA non-coding downstream 408029 8660696 ~ 8661230 (+)
G393467 slit1 other upstream 809729 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1339699 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1621957 6614859 ~ 6618682 (+)
lrba lrba other upstream 2001561 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 2330047 5831544 ~ 5910592 (+)
G394251 NA other downstream 6261 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 883290 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1695074 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1848270 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1946656 10199323 ~ 10239199 (+)

Expression


Co-expression Network