LOC113544437 (xpo5)


Basic Information

Item Value
gene id LOC113544437
gene name xpo5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7958883 ~ 7978619 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943268.2
GTCCCACAGagaactccatttcccatgatTCCGCGGGCGGCCcggcgctgctgctgctgctgctgctactgcagCTGCATGCACGCTGTTGCACAGCTCCTCCGTTAAAGCACCGTGTAAGCGCGTGCAGCTAGCTGGATTAGCTCGGTGAGTGGGGCAGGTGGCGCGGGTGCAGCAGGCATGGCAGAGCCGGTGGCCGCGATGTGCGAGCAGCTGATTAAGGCTGTGACCGTCATGATGGACGCGGAATCCAATCAGCGGTACCGCCTGGAGGCTCTGAAGTTTTGTGAGGAattcaaagaaaaatgtctgtattgTATACCATGTGGCCTTCAGTTAGCAGACAAATCCCAGGCCGCGGTGGTGAGACATTTTGGTCTACAAATACTGGAGCATGTTATAAAGTTTCAGTGGAACAACATGCCACAGCAAGAGAAAGTCCATTTGAAAGACTGCACCATGGAGATGCTGACCAGCGGAACGTATCCCATCTTGGAGGAGGAGAGTCATATTAAAGACGCTCTGTCGAGGATTGTGGTGGAGATGATCAAGAGAGAGTGGCCTCAGCAGTGGCCAGATATGCTGAAAGAGATGGAAACACTCACTACATATGGGGACACGCAGACGGAGCTGGTGATGCTGATCCTGCTGCGGCTGGCCGAGGACGTGATCACGTTCCAGACTCTTCCCCAGCAGCGCCGTAGAGAcatccaacacacactaacgcaGAACATGGACAGCATCTTCAACTTCCTCCTGACCATTCTGCAGCAGCACGTCGACGAGTACAGGAAACTGAAAATAATTCCAGGACAGGAGTTAAAGGCCAAAGCTCATTGTCGAGTCGGTGTGACCACCTTAAACACTCTGGCCGGCTACATAGACTGGGTTGCGCTGGTTCACATCACAAACAACAGCTGCCATTTACTAGAGATCCTGTGCTTACTCCTGAGTGAACCAGAGCTTCAGCTGGAGGCTGCTGAGTGTCTGCTCATTGCGATCAGCAGGAAAGGCAAACTGGAAGACAGGAAGCCATTCATGGTGCTCTTTGATGACGTGGCCATGCACTACATCTTGTCGGCCGCCCAATCAGTGGAAGTGGGGCTCAGCGAGATGAGATACACCTTCCTGAAGAGGTTATGTCAGGTGCTATGTGCTCTAGGCAGTCAGCTCTGTGccttagtgGGCTCGCCTGCAGAAGTGGAGGTTCCTGCTAACCTGAATAAATACATGGAAGCATTCCTCGCCTTCACTACTCACCCCAGTCAGTTTCTTAGATCTTGCACTCAGACCACCTGGGGAAACATGTTCAGACATGAAGTTTTATCTAAGGAGCCTGTTGTTATACAGATggctgttaaatatttaaacgcAACCATGACCAACCTTGTGAAGTCGGGATTCCCATCGAAGAACGACAGCCCGGCTTGTGAATACGCCCGTGTGGACTTCGACAGCGACGAGGACTTCAATGCTTTCTTTCATTCTTTTCGGGCCCAGCAGGGTGACGTTATTCGTCATTCTTGTAAGATTGCTCCTCTTGAAGCCTTCCAGATTGCTGGGGAATGGTTACAGTATCAGATCAACTCGGCCCTCAACACTGGAAATGCTCTGTCTAAAACAGGAGAAGGGATGTGCTCGACGTTTTCGCCCGCAGCTGTGAAGTGGGAAGCCATGACCTTTTTCACAGAGAGTGTGATGGGACAGCTTTTTAAAGTCCTGGATAAGGAGAAGCTGCCTGTTGATCAAGGCATGGAGCTGCTGCACGCCGTAGTGAACTACGAGACGCGGGATCCCGTCATCCTGTCCTGCATCCTCACCAACCTGTCCACCCTCTTCCCCTTTGTCTTGCATCGCCCAGAAGTTCTACCTCAAGTGTTCTTTAAGCTGTTTCCTGCTATCACATTCGAACTGGTTGAAGAAAGCAAGGCTCCTCGAACCCGAGCGGTGAAGAACGTCAGAAGACATGCCTGCTCATCCATCATCAAGATGTGTCGAGATTATCCAGAGTTTATACTGCCCTGCTTTGACATGCTTTACACTCGAGTGAAGGAGCTCTTCTCCAATGAGCTGCTGCTGACTCAGATGGAGAAGTGTGCACTCATGGAGGCGCTGGTGCTGATCAGCAACCAGTTTAAAGACTACAACAAGCAGAAAGCCTTCTTAGTGGAGCTCGTGGGCCCTGTAACGGCACGCTGGCTCTCCGAGGAGATGCGCAGCGTATTGTCAGATCCAGCAAGCTTTATTACGTTTATTGGTGCTGATCAGGCCAACAGTGAACCCGGCGCTGAGGATCAGATGGGAATCAACAGGTCAAGGGTTAGTTTTTGTGTGTACACCATTCTGGGCGTGGTGAAGCGAGCACGCTGGCCTGCGGATGTGGAGGAAGCCAAAGCCGGGGGTTTCATAGTGGGCTACTCTCCTGCTGGAGCGGCCATCTACAGAAACCCCTCCACAGAGCCCCTGCTGGCGCTGCTTCCCAATCTGCTCACCCTCATCAGGACCCACAACAGCTTATTTCTACCAGAGAACCTATCTCGGCTCAGCGAGACCTTCAGCCGGGCGTATGATGTCATGGACGTGGAGAAGAATCTCATTTTAGGAATCCCCCAGCAACTGTTGGACGTGTACGACTCTCCGGTGTACAGAAGCGCACTAGAGCGGATGCAAGGCTTCTTCTGCACACTCTATGACAACTGTTACCATGTGCTAGGGCATGCTGGCCAGGCCTTGCTGCAGGACTTTTATACGATAGAGGGGTTGGCCGAACAGTTGGTAGGCACTGCCCTCATTCACCTGGAGCACGTTCCTGACCATCGGCTTCGCCCTTTGCTTCGGGTGTTCATGAAACCACTGGTCACTTCCTGTCCTCCAGAATATTACGAGAGTCTTCTCTGTCCACTGCTCGGCCTTCTGTTTTCTCACCTGCTGCAGAGACTGAACCTTCGGTGGCAGATCATCAACCAGAGGACTAGCATGTGtggTCCAGATGATGACGAGGCATATGAGGAGAATCAGGTGTCTCAGGAGATGCTGGAAGATCGGCTAGTGCGCTTGGCCACGCGAGAAGTCATGGATCTCCTCTGTGCATCGTGCATATCGAGAAAGATGCCTGAATCAGCAGCAAACAGAGAGGATGCAGATGgggATGAGGAAATGATGGCAACCGATTCTTCTCAGCTAAATGCGTCACATGCTTCAGATGAGCTCACCGAACTGGGCAAGTGTCTCCTTAAACATGAGGACATCTACATGAATCTGCTGGCTATCTCGTTTAACTCCCTGTCATGGAGGGACACCACTAACTGTCAGCGGGCCGCTACCCTGATCTGCTGGACTTTGCTGAGACAGGTGGTGGGTGCGAATTTGCTCCCAGATGCCGTGACGTGGCTGTACACCAGAGTGCTGAGCGGCCTGCAGATGCATGGCCAGCATGAGGGCTGCAACGCCGCACTAACGCAACTCGCCCTGCTCATCTATGATGCTCTGCGGCCTCAATATGCAGAGCTGCGTTCCATCATGAACCAGATCCCCAATGTTCAACCTGACCTGCTAGAGCAGTTTGATCAGAAAACCATCAACCCTGCATCGCAGAAAGTTGgcgaaaagaagagaaaagaccAGTTTAAGAAGCTGATCGCAGGAGCTGTTGGGAAACCTCTTGGGCAGCAGTTTAAGAAAGAGGTCCACATCCGAAACCTTCCCTCGCTCTTTAAGAAGGTGAAGCCTAACAAAGACATTGTGGCTAACAGCGAGAATGCTGGATTGGTCGCTCTCTTTTCACCTGAACATGATGATcattagggatttttttttttttttttttt
>XM_026943269.2
GCGTCCCACAGagaactccatttcccatgatTCCGCGGGCGGCCcggcgctgctgctgctgctgctgctactgcagCTGCATGCACGCTGTTGCACAGCTCCTCCGTTAAAGCACCGTGTAAGCGCGTGCAGCTAGCTGGATTAGCTCGGTGAGTGGGGCAGGTGGCGCGGGTGCAGCAGGCATGGCAGAGCCGGTGGCCGCGATGTGCGAGCAGCTGATTAAGGCTGTGACCGTCATGATGGACGCGGAATCCAATCAGCGGTACCGCCTGGAGGCTCTGAAGTTTTGTGAGGAattcaaagaaaaatgtctgtattgTATACCATGTGGCCTTCAGTTAGCAGACAAATCCCAGGCCGCGGTGGTGAGACATTTTGGTCTACAAATACTGGAGCATGTTATAAAGTTTCAGTGGAACAACATGCCACAGCAAGAGAAAGTCCATTTGAAAGACTGCACCATGGAGATGCTGACCAGCGGAACGTATCCCATCTTGGAGGAGGAGAGTCATATTAAAGACGCTCTGTCGAGGATTGTGGTGGAGATGATCAAGAGAGAGTGGCCTCAGCAGTGGCCAGATATGCTGAAAGAGATGGAAACACTCACTACATATGGGGACACGCAGACGGAGCTGGTGATGCTGATCCTGCTGCGGCTGGCCGAGGACGTGATCACGTTCCAGACTCTTCCCCAGCAGCGCCGTAGAGAcatccaacacacactaacgcaGAACATGGACAGCATCTTCAACTTCCTCCTGACCATTCTGCAGCAGCACGTCGACGAGTACAGGAAACTGAAAATAATTCCAGGACAGGAGTTAAAGGCCAAAGCTCATTGTCGAGTCGGTGTGACCACCTTAAACACTCTGGCCGGCTACATAGACTGGGTTGCGCTGGTTCACATCACAAACAACAGCTGCCATTTACTAGAGATCCTGTGCTTACTCCTGAGTGAACCAGAGCTTCAGCTGGAGGCTGCTGAGTGTCTGCTCATTGCGATCAGCAGGAAAGGCAAACTGGAAGACAGGAAGCCATTCATGGTGCTCTTTGATGACGTGGCCATGCACTACATCTTGTCGGCCGCCCAATCAGTGGAAGTGGGGCTCAGCGAGATGAGATACACCTTCCTGAAGAGGTTATGTCAGGTGCTATGTGCTCTAGGCAGTCAGCTCTGTGccttagtgGGCTCGCCTGCAGAAGTGGAGGTTCCTGCTAACCTGAATAAATACATGGAAGCATTCCTCGCCTTCACTACTCACCCCAGTCAGTTTCTTAGATCTTGCACTCAGACCACCTGGGGAAACATGTTCAGACATGAAGTTTTATCTAAGGAGCCTGTTGTTATACAGATggctgttaaatatttaaacgcAACCATGACCAACCTTGTGAAGTCGGGATTCCCATCGAAGAACGACAGCCCGGCTTGTGAATACGCCCGTGTGGACTTCGACAGCGACGAGGACTTCAATGCTTTCTTTCATTCTTTTCGGGCCCAGCAGGGTGACGTTATTCGTCATTCTTGTAAGATTGCTCCTCTTGAAGCCTTCCAGATTGCTGGGGAATGGTTACAGTATCAGATCAACTCGGCCCTCAACACTGGAAATGCTCTGTCTAAAACAGGAGAAGGGATGTGCTCGACGTTTTCGCCCGCAGCTGTGAAGTGGGAAGCCATGACCTTTTTCACAGAGAGTGTGATGGGACAGCTTTTTAAAGTCCTGGATAAGGAGCTGCCTGTTGATCAAGGCATGGAGCTGCTGCACGCCGTAGTGAACTACGAGACGCGGGATCCCGTCATCCTGTCCTGCATCCTCACCAACCTGTCCACCCTCTTCCCCTTTGTCTTGCATCGCCCAGAAGTTCTACCTCAAGTGTTCTTTAAGCTGTTTCCTGCTATCACATTCGAACTGGTTGAAGAAAGCAAGGCTCCTCGAACCCGAGCGGTGAAGAACGTCAGAAGACATGCCTGCTCATCCATCATCAAGATGTGTCGAGATTATCCAGAGTTTATACTGCCCTGCTTTGACATGCTTTACACTCGAGTGAAGGAGCTCTTCTCCAATGAGCTGCTGCTGACTCAGATGGAGAAGTGTGCACTCATGGAGGCGCTGGTGCTGATCAGCAACCAGTTTAAAGACTACAACAAGCAGAAAGCCTTCTTAGTGGAGCTCGTGGGCCCTGTAACGGCACGCTGGCTCTCCGAGGAGATGCGCAGCGTATTGTCAGATCCAGCAAGCTTTATTACGTTTATTGGTGCTGATCAGGCCAACAGTGAACCCGGCGCTGAGGATCAGATGGGAATCAACAGGTCAAGGGTTAGTTTTTGTGTGTACACCATTCTGGGCGTGGTGAAGCGAGCACGCTGGCCTGCGGATGTGGAGGAAGCCAAAGCCGGGGGTTTCATAGTGGGCTACTCTCCTGCTGGAGCGGCCATCTACAGAAACCCCTCCACAGAGCCCCTGCTGGCGCTGCTTCCCAATCTGCTCACCCTCATCAGGACCCACAACAGCTTATTTCTACCAGAGAACCTATCTCGGCTCAGCGAGACCTTCAGCCGGGCGTATGATGTCATGGACGTGGAGAAGAATCTCATTTTAGGAATCCCCCAGCAACTGTTGGACGTGTACGACTCTCCGGTGTACAGAAGCGCACTAGAGCGGATGCAAGGCTTCTTCTGCACACTCTATGACAACTGTTACCATGTGCTAGGGCATGCTGGCCAGGCCTTGCTGCAGGACTTTTATACGATAGAGGGGTTGGCCGAACAGTTGGTAGGCACTGCCCTCATTCACCTGGAGCACGTTCCTGACCATCGGCTTCGCCCTTTGCTTCGGGTGTTCATGAAACCACTGGTCACTTCCTGTCCTCCAGAATATTACGAGAGTCTTCTCTGTCCACTGCTCGGCCTTCTGTTTTCTCACCTGCTGCAGAGACTGAACCTTCGGTGGCAGATCATCAACCAGAGGACTAGCATGTGtggTCCAGATGATGACGAGGCATATGAGGAGAATCAGGTGTCTCAGGAGATGCTGGAAGATCGGCTAGTGCGCTTGGCCACGCGAGAAGTCATGGATCTCCTCTGTGCATCGTGCATATCGAGAAAGATGCCTGAATCAGCAGCAAACAGAGAGGATGCAGATGgggATGAGGAAATGATGGCAACCGATTCTTCTCAGCTAAATGCGTCACATGCTTCAGATGAGCTCACCGAACTGGGCAAGTGTCTCCTTAAACATGAGGACATCTACATGAATCTGCTGGCTATCTCGTTTAACTCCCTGTCATGGAGGGACACCACTAACTGTCAGCGGGCCGCTACCCTGATCTGCTGGACTTTGCTGAGACAGGTGGTGGGTGCGAATTTGCTCCCAGATGCCGTGACGTGGCTGTACACCAGAGTGCTGAGCGGCCTGCAGATGCATGGCCAGCATGAGGGCTGCAACGCCGCACTAACGCAACTCGCCCTGCTCATCTATGATGCTCTGCGGCCTCAATATGCAGAGCTGCGTTCCATCATGAACCAGATCCCCAATGTTCAACCTGACCTGCTAGAGCAGTTTGATCAGAAAACCATCAACCCTGCATCGCAGAAAGTTGgcgaaaagaagagaaaagaccAGTTTAAGAAGCTGATCGCAGGAGCTGTTGGGAAACCTCTTGGGCAGCAGTTTAAGAAAGAGGTCCACATCCGAAACCTTCCCTCGCTCTTTAAGAAGGTGAAGCCTAACAAAGACATTGTGGCTAACAGCGAGAATGCTGGATTGGTCGCTCTCTTTTCACCTGAACATGATGATcattagggatttttttttttttttttttt

Function

symbol description
xpo5 Predicted to enable RNA binding activity and nuclear export signal receptor activity. Predicted to be involved in RNA export from nucleus. Predicted to act upstream of or within intracellular protein transport and nuclear export. Predicted to be part of RNA nuclear export complex. Predicted to be active in cytoplasm and nucleus.

GO: NA

KEGG:

id description
K14289 XPO5; exportin-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943268.2 True 3827 mRNA 0.52 32 7958885 7978619
XM_026943269.2 False 3826 mRNA 0.52 32 7958883 7978619

Neighbor

gene id symbol gene type direction distance location
LOC113544435 LOC108260879,LOC108437854,LOC105900835,LOC103357730 coding upstream 322836 7620100 ~ 7636047 (+)
LOC113544382 LOC108260553 coding upstream 539248 7413196 ~ 7419635 (+)
si:ch211-63p21.1 LOC108260971,LOC108437862 coding upstream 549079 7401369 ~ 7409804 (+)
LOC113544270 LOC108260482 coding upstream 652353 7301639 ~ 7306530 (+)
LOC113544234 LOC108260940 coding upstream 916971 7034279 ~ 7041912 (+)
efemp1 efemp1,LOC108437849 coding downstream 38593 8017212 ~ 8051220 (+)
LOC113544397 mark1,LOC108260538,LOC108414040 coding downstream 88814 8067433 ~ 8125438 (+)
cilk1 ick,LOC108261001,LOC108256381 coding downstream 175432 8154051 ~ 8168988 (+)
vit vit coding downstream 229051 8207670 ~ 8237492 (+)
si:ch1073-291c23.2 LOC108260910 coding downstream 262020 8240639 ~ 8252667 (+)
G393997 NA non-coding upstream 34049 7923946 ~ 7924834 (+)
G393994 NA non-coding upstream 36537 7922145 ~ 7922346 (+)
G393484 NA non-coding upstream 430328 7448634 ~ 7528555 (+)
G393450 zgc:55733,LOC108260929,LOC107707310,LOC107657188 non-coding upstream 587382 7367880 ~ 7371501 (+)
G393394 NA non-coding upstream 609366 7291238 ~ 7349517 (+)
LOC113544216 NA non-coding downstream 12113 7990732 ~ 8006786 (+)
G394103 NA non-coding downstream 82184 8060803 ~ 8061192 (+)
G394142 NA non-coding downstream 158663 8137282 ~ 8137508 (+)
G394147 LOC108260699 non-coding downstream 163228 8141847 ~ 8142593 (+)
G394150 NA non-coding downstream 166824 8145443 ~ 8146117 (+)
G393467 slit1 other upstream 527973 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1057943 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1340201 6614859 ~ 6618682 (+)
lrba lrba other upstream 1719805 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 2048291 5831544 ~ 5910592 (+)
G394251 NA other downstream 280309 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 1157338 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1969122 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 2122318 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 2220704 10199323 ~ 10239199 (+)

Expression


Co-expression Network