epdl1 (LOC108260763)


Basic Information

Item Value
gene id epdl1
gene name LOC108260763
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5437417 ~ 5442725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945167.2
gtgtgctGGTGTTAGTGAGGTACTATATAAAGGAAGAGGGAGCATAATTCACACAAGTGAGAACACTATAGTGACAAGACATGCAGCTCTGGTTGTGTTGCGCTCTGCTGGTGTTTGTGGCAGGAGGCTGCTTGGCACAGAAACCTCGTCCATGCAgaaGTCCTCCTCTCCTCGAGGGAAGCCTCACTGTGACAGCTCAAAATGGCGGTTACAGCGCATATGGGAAGTATGCTTACGATGCTATTCTCCAGCGTGTCCGCTTTGGAGAGTTTGTCCATCATGATAATAAAACGCTCATTAGGGATGTTCTGCTACTCTATCGAGAGCATGTGATGTACCTGATCAACCCTAAAAACAAGACGTGCCAAAAGCGGAAGCTGACGTCCCAGTTCCACCCGATGAAGATCCCCTGCAACTCTACTCTTCTTGGGCAGGTAGTGTTAGGGAGTCTCTCTGCACCTGGAGAAGGTCTGCTTGTCAACTCATGGACTGGAGAGGCATCTGAGGACCAAGgCCGGTACATCCTGACGTTCACTGAGTTTGGCTGCCTTCCTGTCAGTGTCCTTTTCAACAGGCCAAAGACCGGGTGGATTGTGATGAGtttttttaacaACATTCGTGGGATTAAGGAGCCGTCTGTGTTCTTTCCTCCGCCAATCTGCAAGAATGCTACACTGGATACAGAAGAGGAAGGAGATTTCTTCAGTGCTTTCTTCTGAGGCAATACTAGTGCTTCATATGACCTATATGTACCACTGAACATTAATGAACTTAAATAAAGAGTTTGGcaaatttaaatgta

Function

NR:

description
ependymin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945167.2 True 802 mRNA 0.47 6 5437417 5442725

Neighbor

gene id symbol gene type direction distance location
alpk1 alpk1 coding upstream 536 5428037 ~ 5436881 (+)
LOC113545754 LOC108260764 coding upstream 18327 5413890 ~ 5419090 (+)
LOC113545788 LOC108260872,LOC108440424,LOC102225496,LOC103145193,LOC103480658,LOC105936236,LOC107086908 coding upstream 67919 5367444 ~ 5369498 (+)
LOC113545783 elavl2 coding upstream 205978 5187559 ~ 5231439 (+)
LOC113545709 caap1 coding upstream 358508 5074892 ~ 5078909 (+)
LOC113544404 LOC108260837,LOC108436836 coding downstream 147175 5589900 ~ 5593569 (+)
si:cabz01076231.1 LOC108260839,LOC108436834,LOC107656773,LOC107574011,LOC107709299 coding downstream 163597 5606322 ~ 5611615 (+)
tmem154 NA coding downstream 316216 5758941 ~ 5773253 (+)
gatb gatb,LOC106602370 coding downstream 522759 5965484 ~ 5979895 (+)
sh3d19 NA coding downstream 566538 6009263 ~ 6026147 (+)
G391612 NA non-coding upstream 32665 5404521 ~ 5404752 (+)
G391574 NA non-coding upstream 60620 5372041 ~ 5376797 (+)
LOC117596387 NA non-coding upstream 251760 5176090 ~ 5185657 (+)
LOC117596386 NA non-coding upstream 280710 5096248 ~ 5156707 (+)
LOC117596306 NA non-coding upstream 363011 4864296 ~ 5074406 (+)
G391576 NA non-coding downstream 43751 5486476 ~ 5489315 (+)
G391585 NA non-coding downstream 89113 5531838 ~ 5534270 (+)
G391580 NA non-coding downstream 92210 5534935 ~ 5536415 (+)
G391643 NA non-coding downstream 98439 5541164 ~ 5541456 (+)
G391586 NA non-coding downstream 99310 5542035 ~ 5542361 (+)
LOC113545745 ptprd other upstream 580443 4463898 ~ 4856974 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other upstream 2036592 3359377 ~ 3400825 (+)
LOC113545784 clhc1 other upstream 3050550 2364554 ~ 2386867 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other upstream 3686655 1715265 ~ 1750762 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other upstream 3804645 1619297 ~ 1632772 (+)
LOC113544283 fbxw7,LOC107745860 other downstream 388819 5831544 ~ 5910592 (+)
lrba lrba other downstream 596689 6039414 ~ 6239078 (+)
LOC113544406 LOC108260665,LOC108260638 other downstream 1172134 6614859 ~ 6618682 (+)
LOC117596330 NA other downstream 1454268 6896993 ~ 6900940 (+)
G393467 slit1 other downstream 1984893 7427618 ~ 7430910 (+)

Expression


Co-expression Network