lrrtm1 (lrrtm1,LOC107689474,LOC107706126,LOC107551676,LOC107558618)


Basic Information

Item Value
gene id lrrtm1
gene name lrrtm1,LOC107689474,LOC107706126,LOC107551676,LOC107558618
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 1315659 ~ 1320076 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945346.2
CTCGGCTGAATTGTGAGTGGCTCACGACACTTAGTGAACAGAAGGTGTTTCTGCATGCACTGGCATTGCACTACTCTGCTGCAAGGGCTCCAgctcctctctttttctctctctctttctcttcctctctccctccctctctctctctctctctctctctttctctcgttctcttttctctctctctctcttttctctccacaAACCAGCCCTGCCTTTCAGCCTCTATGCTTCAGCATCTCCGCTCAGCAACAGCCTTTTCCTCAGCCTACACAAAATGAGCGACTCTCAAAAGAGGGCTCACTGGAAACCGGGCTGACAGGACATTGGACtaccaaaattaaaacaaaaaaacaggaaaaaaagaaagagagaaagaaaaatgccaGAGCAACTAGCATTCATTTCAGATGAGCGCTTATTTCTGAGGAGCTGTCCACCGAGAGAATGATGACCGGTCCGAATGGATACGAGCCATGCAGCTTACCGACAGCTTCAAGTAACGGACTTTAATTTGCATCGACACTTCAAGAGAATCAGTTGCACAAAAAATacaggggaggaaaaaaagacttcTGTTTTGACTTCCCCCTCTTGTGaacgtgtgtgtctgtttttttttcatcctctcATCTCGCTCTAATCAGCGCAGCAGTCACTGCAGAGAAGCAGGAGAGGGAGGACCGTGCTCATGCATGCAGTCTGGGCAGCTTGCATTTCCTGCGAGTGCACTGAATGCCACTTGGATTCCTTCTCTTTCTGGCTCTTTCACGCGAGGAGAACTAAGACATTGTAAGTCTGCCAGATTCTGGTAGCTGCTGAAAAGGAGGGGGGAGGCTGCATTTGTACCACACTGGGATCTTTTTTATATTCACACCTAATTATTGCAGGCACAAAGGGAGCAGCTGAATAGAGGTTGTCAGCCTCTGGAAAAGGGATTTTCTTTCACTTTGAGTAACAAATCACCATCACCCAAACCacataaacaaaaagagaaaaaaaatcatgctgcTCAAAATGAGACAAATCTAAAAGATTCAATGAACTTCTTCTTCGAGACACTGCAGGATATTCATGCTAATGGATTTCCTTCTAATTGGTCTGTATTTAAAGTGGACGCTAAGAAAGCCCCCCGGGTTGTTACTGTGCTCTCTGGGCATCCTTCTGAAAATGGTTCCCCTGGTGGGGGGGAGCTGTCCAAGGCTTTGCCGCTGCGACAGCAAGCTCCTCTACTGTGAGGGACTCAACTTGACGGACATTCCCCACAACCTGAGCAGCGCCACCGGCTTGTCTCTGCGGGAGAACAACATATCGGAGCTGCGTGAGGGGCACTTTGTCGGCCTGTCGCAGCTCACCTGGCTATACTTGGATCATAACAACATCGAATACGTGGAGGAGAGCGCTTTCGAGAGGCTGCGGAGGATTAAAGAATTGGACCTGAGCACCAATCGGATAGAGAGCTTGTCTAATGGAACCTTCAGACCCCTACCCAATCTGCGCATCTTGGATTTATCCTACAACAGACTGCAGTCCCTGGAGCCAGACCTTTTTCATGGGCTTAGGAAGCTTACTAATTTGCATTTACGATACAACGCCCTGAAATTTGTGCCCGTACGGATCTTCCAGGACTGCAGGAGCATGCAGTTTCTGGATTTGGGCTACAACCAGCTACAGAGCCTGGCCCGAAACTCATTCGCTGGTCTTTTTAAGCTGACTGAGCTGCATCTGGAGCACAACGAGCTGGTGAAAATCAACCTGGCCCACTTTCCCCGCCTCATCTCTCTGCGCACACTCTACATGCGTAATAACAAAGCCACCATTGTGGTCAGCACCCTGGACTGGACCTGGCACTTCCTGGAAAAGATCGATTTCTCAAACAATGAGATTGAATACATTGAGCCGCATGTCTTTGAGAGTGTGCCCAACCTCAAGGAGCTTATGCTGGACTCTAATAAGCTGACATATGTGGACCAGCGCATTCTGGGCTCCTGGACATCCCTGGGCAGTATCACCTTGTCCGGGAATGCATGGGAATGCAGCCGCAATGTCTGTGCCCTGGCCTCCTGGCTGAGCAGCTTCCAGGGTCAACGTGACAGTGCCTTGCAGTGTGCCAGCCCGGACATGGCCCAAGGCGAGGACATCCTGGATGCCGTCTATGCCTTCCAGCTATGCGAGGATGGCATCGAGGCCACCACTCAGACCTACACGGCCACTAGAGACCTGGCCCGAGGCTCCATTTTTAAAGGTCCCACCAGGACACCATATGATTTGCAAGACATGGAGGGTGGTGAGGTGGTGACCAATTCCTTCACAGTGACTGCGGCCACTGATGACCTGGAGAGCACCATGCAGATCCACAAGGTAGTGACAGGCACCATGGCACTCATCTTCTCATTCCTGATTGTAGTGCTCATGCTCTATGTGTCTTGGAAGTGTTTCCCAGCTGGCGTGAGGCAGATGAGACAGTGCTTCAGCAACCAGCGACGCAAGCAGAAGCAAAAGCAGACCATGCAGCAGATGGCCACCCTGTCCACTCCTGAATACTATGTTGACTACAAGCCTAATCATATCGAGGGGGCCCTCGTCATCATCAATGAATTCGGATCCTGCACTTGCCAGCAACAGGCATCTCGGGAGTGTGAGGTGTGACAGTCTGGCTGCTGGATATCTTGCAATCACAAATTTTGTTGGATCAATGTACATGGGACATGCTTTTACACTGCATCACACTGTGCTGCTTTCTCAAGGATGCTTGATggcacatttggaaaaaaatgggACAAGGCCAAGGATTTACTGCTAATATAAAAGGCTTCAGTGGGTTTTGATGGACCTGGTTTTGGGACTGGTTTACAAGCAAGAGTGAGAAGCTTTGAGGAATACAGGGACTAATCAAGGTCAAGTTGTGAAGCTTGGATATTTGAGCTTTAATATGTCTTTCTACTACAGAAGATTTAAAGCTAATGAGGACATTGAtgaaaacatgcttttttttcattgtggTATCAAAAATCTAAATgggttaaaaaatgaaatgagacaaGTCTGTGTAAAATATGTTGAAATGCAAGAGTGggaaataaaatacaagaagCTATCTTATTTCTTTTGTAAACTATGGAAAAAGaatcaaatgtttaaataaataaaaaagcaattcACAGTAGTCAGGTCTGGAGATAAGTCTAAGGGTAGCTGGGGAGGACTGGCAGGGTGACGATGTTGTATTTAAACAGGTGATCTCGTCACATCGTTTTGAAATGTCAAGCCTCAATCTGAAATTCAAAATTCAGATCTCCCccctctcttactctctctctctctctctctctctcctatctctCTATCTCGTTCAATCTGCTTCTCACCGTATGTGAGGAATAATCACTGTGCAGATTTGATGTTACTGTTGtggttgcttttttttatctattcCCATGTCCCTCTCCTTACAGATTAAGCAAATtagcagagggaaaaaaaagggatgcATGACGCATTCAGATCAGATGGtgcaccattttttttacatgataaaGTCATGATGCGGGTtgcttttggaaaaaaaaaaaacagaatgaggGTGTTTAAAGGCTCAAACCTATGCctattgcttttttttgcttgaCAGTGGTGAAATCAGAGCGAGACAAAACAAAGCCTTAATATTCAGCTAGAAGAGATGATGAAGAGATGATTATCTGGCAGATCTACTGTGAATCTTTGAGATATCAGCCTACTATATAAAAAAGAGCCCCTTCTATCTTTTGAGGCGTTTGTTGAGTGAATATTGGCAGGCATTGATGTGTATCCTGTGGCattggcagacagacagaagaaagaACGTGGTTTTGTGAAAGAAGGTGTAGACTGCTCTCTAGTGTCCCAGCACCAGCAGTAGTGAGAGCAAGCCCTTGACGTTTCTTACCTTTCgatgtgtgagattgtgtgtgtactCGTTTGCTCAGCTGCAGAGAATAATCTGGCATTCAGAACACACAGGATGGTCAGTGGAAGTAAACAAGAGAGCTCTGAAGTGAAAGTCTCATCTCCAGTCTCCCACTGCCACTCAGCATAGCGGATCTTGCCGTCATTGCCACGGTGAAGGGGCTTGAGCTAAAGGAGTCTGAATGTGTGCGCGGCTGtctttatatttgattatttgagCGTGGATCAAGAAAATCATGTTCTAGACTGTTCTTTTGCATGTGcggcttgaaaaaaaaaaagaaaactgtgaaGAGATCTGAGCAGGGATTTTTACAAACCTAAAAACA

Function

symbol description
lrrtm1 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including anterior neural keel; anterior neural rod; basal plate midbrain region; immature eye; and nervous system. Orthologous to human LRRTM1 (leucine rich repeat transmembrane neuronal 1).

NR:

description
PREDICTED: leucine-rich repeat transmembrane neuronal protein 1

GO:

id name namespace
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K16665 LRRTM1_2; leucine-rich repeat transmembrane neuronal protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945346.2 True 4277 mRNA 0.46 2 1315659 1320076

Neighbor

gene id symbol gene type direction distance location
suclg1 suclg1 coding upstream 336333 961694 ~ 979326 (+)
LOC113545722 NA coding upstream 364835 941961 ~ 950824 (+)
LOC117596376 LOC108260515,LOC108260518,LOC108260589 coding upstream 379260 931021 ~ 936399 (+)
si:dkey-162b23.4 slc9b2 coding upstream 389694 916769 ~ 925965 (+)
bdh2 bdh2,LOC107746975 coding upstream 399370 906881 ~ 916289 (+)
LOC113545749 nrxn1,LOC108443646 coding downstream 553240 1873316 ~ 2185917 (+)
LOC113545799 LOC100305044 coding downstream 1000266 2320342 ~ 2335887 (+)
rtn4b rtn4,LOC108412986,LOC105890919 coding downstream 1068755 2388831 ~ 2413115 (+)
ppp1r21 ppp1r21 coding downstream 1095004 2415080 ~ 2429990 (+)
zgc:64201 LOC108260727,LOC108260508,LOC108429269,LOC105890925 coding downstream 1112787 2432863 ~ 2438882 (+)
G389707 NA non-coding upstream 82806 1216729 ~ 1232853 (+)
G389542 NA non-coding upstream 316956 980423 ~ 998703 (+)
LOC117596382 NA non-coding upstream 376485 938666 ~ 939174 (+)
G389515 NA non-coding upstream 574353 736859 ~ 741306 (+)
G389506 NA non-coding upstream 584494 612303 ~ 731165 (+)
G389959 smox non-coding downstream 367721 1687797 ~ 1692987 (+)
G389967 NA non-coding downstream 392964 1713040 ~ 1713242 (+)
G389985 NA non-coding downstream 434641 1754717 ~ 1760912 (+)
G390019 mogs,LOC108260492,LOC108260493,LOC106602766 non-coding downstream 516688 1836764 ~ 1850574 (+)
G390020 LOC108260493 non-coding downstream 521997 1842073 ~ 1854169 (+)
G389438 LOC108260589,LOC108260518,LOC108260515 other upstream 365252 402002 ~ 950407 (+)
G389525 NA other upstream 510443 804360 ~ 805216 (+)
G389524 NA other upstream 515093 787376 ~ 800566 (+)
LOC117596315 NA other upstream 965654 348396 ~ 350005 (+)
LOC113524533 NA other upstream 967324 333139 ~ 348335 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other downstream 299221 1619297 ~ 1632772 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other downstream 395189 1715265 ~ 1750762 (+)
LOC113545784 clhc1 other downstream 1044478 2364554 ~ 2386867 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other downstream 2039301 3359377 ~ 3400825 (+)
LOC113545745 ptprd other downstream 3143822 4463898 ~ 4856974 (+)

Expression


Co-expression Network