LOC113545777 (LOC103385808,LOC103366237,LOC107690779,LOC103033313,LOC102208922)


Basic Information

Item Value
gene id LOC113545777
gene name LOC103385808,LOC103366237,LOC107690779,LOC103033313,LOC102208922
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 4248870 ~ 4272437 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945362.2
gtgtgtgtgtgtgcgtgtgcgtgtgagtgagtgtgagtgtgcgcGCGCCCCTGCTCTACCGAAGGCGCAAAAAAAGCCTCTATAGCGAACACCCTTCAAATATGGCGGAGGGGGAACTGGACGTCGATTCGCTCATCTCCAGGCTTTTAGAGGtgcgaGGATGTCGCCCAGGAAAGATTGTGCAGATGACGGAGGCGGAGGTGCGAGGGCTGTGTATTAAATCCCGAGAGATCTTCCTGAGTCAGCCCATTCTGTTGGAGCTGGAGGCCCCGCTCAAAATCTGCGGTGACATCCACGGTCAGTACACAGATCTGCTAAGGTTGTTCGAGTACGGCGGATTCCCCCCGGAGGCAAACTACCTCTTCCTGGGCGATTACGTGGACCGAGGAAAGCAGTCTCTGGAGACCATCTGCCTCCTGCTGGCCTACAAGATCAAATATCCCGAAAACTTCTTCCTGCTGCGGGGAAACCACGAGTGCGCCTCCATCAACCGCATCTACGGCTTCTACGACGAGTGCAAGCGCAGGTTCAACATCAAACTTTGGAAGACATTCACTGACTGTTTCAACTGTCTGCCCATCGCCGCCATCGTGGATGAGAAAATATTCTGCTGCCATGGAGGTCTGTCTCCTGACCTGCAGTCCATGGAGCAGATCAGACGGATCATGAGGCCCACAGACGTCCCTGACACAGGGCTGCTGTGTGACCTGCTGTGGTCCGACCCGGATAAAGACGTTCAGGGCTGGGGAGAGAATGACCGCGGCGTGTCCTTCACCTTCGGAGCTGATGTGGTCAGCAAGTTCCTCAACCGCCACGATCTGGACCTCATCTGCAGAGCGCACCAGgTGGTGGAGGATGGGTATGAGTTCTTTGCCAAGAGACAGCTGGTCACTCTGTTCTCTGCTCCGAACTACTGCGGCGAGTTTGACAACGCCGGCGGCATGATGAGTGTGGACGAAACGCTCATGTGTTCCTTCCagATCCTGAAGCCTTCAGAGAAGAAGGCTAAGTACCAGTACGGTGGAATGAACTCGGGGCGTCCCGTGACTCCGCCCCGCACAGCCACCCCACCCAAAAAACGGTGAACGCTCGAACGAGTGACGCCGAAATgtagagcaagagagagagaaagaaaagagtgaaCGAATCGGAGGATGAAGTACAAGGCAAGATCGAGTGTCAAAGCTCCCTCTGCAATTTCTACCATGATGGAAAAACAATGTAGTCATATACACAGCGAGAAGCGACCCTTTCTGATTTTAAACACTTATTAAACTTTCCCCTCATCTCCTAAACTTTCTTCTGTACTCCTATACTCTGTTCTTTTCTCCATCTTTCAGTCCCAGTCTTTGTCTGTGTAACCACGTTTTTCAATGAagtgttttggggaaaaatgtatacttactgacacacacacatacacacacacatacacgcacacacacacattagtctGTCTGCATATCGGAGTGTTCCACTTtcgttttgtttggtttgtgttttggtttacCTATGACAGAATGATGTACATTGACtagttctttctgtttttttagtttcattCTTCCCGACCTGTTTGAGAGAAACAGGAACACGTAAATAAACCAATAACTTCGTCTGGGTTTTCAGTAAATAAACCAGAATAAACTGAAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945362.2 True 1653 mRNA 0.50 8 4248870 4272437

Neighbor

gene id symbol gene type direction distance location
c28h11orf68 c29h11orf68,cunh11orf68,LOC103032366 coding upstream 28992 4217028 ~ 4219878 (+)
nrxn2b nrxn2b,LOC108261005,LOC108427447,LOC107732688,LOC107679953 coding upstream 101802 3556353 ~ 4147068 (+)
LOC113545751 mpdz coding upstream 915693 3293191 ~ 3333177 (+)
zgc:64201 LOC108260727,LOC108260508,LOC108429269,LOC105890925 coding upstream 1809988 2432863 ~ 2438882 (+)
ppp1r21 ppp1r21 coding upstream 1818880 2415080 ~ 2429990 (+)
LOC113545764 crgm2,LOC108260584,LOC108260664,LOC108260581,LOC108260580,LOC108260582,LOC108260583,LOC108260578,LOC108427436,LOC108427435 coding downstream 62173 4334610 ~ 4403742 (+)
LOC113545765 crgm2,LOC108260584,LOC108260664,LOC108260581,LOC108260580,LOC108260582,LOC108260583,LOC108260578,LOC108427436,LOC108427435 coding downstream 131546 4403983 ~ 4404906 (+)
LOC113545774 crgm2,LOC108260584,LOC108260664,LOC108260581,LOC108260580,LOC108260582,LOC108260583,LOC108260578,LOC108427436,LOC108427435 coding downstream 134930 4407367 ~ 4408332 (+)
LOC113545771 crgm2,LOC108260584,LOC108260580,LOC108260664,LOC108260581,LOC108260582,LOC108260583,LOC108260578,LOC108427436,LOC108427435 coding downstream 139325 4411762 ~ 4412705 (+)
LOC113545772 crgm2,LOC108260584,LOC108260664,LOC108260581,LOC108260582,LOC108260580,LOC108260583,LOC108260578,LOC108427436,LOC108427435 coding downstream 142413 4414850 ~ 4416213 (+)
G391386 NA non-coding upstream 35042 4213244 ~ 4213828 (+)
LOC113545714 NA non-coding upstream 72968 4149035 ~ 4175902 (+)
G391143 NA non-coding upstream 847087 3400928 ~ 3401783 (+)
LOC117596362 NA non-coding upstream 1077747 3136628 ~ 3171123 (+)
G390456 ppp4r3b non-coding upstream 1742372 2506065 ~ 2506498 (+)
LOC117596354 NA non-coding downstream 173019 4445456 ~ 4459340 (+)
G391500 NA non-coding downstream 431331 4703768 ~ 4705703 (+)
G391512 NA non-coding downstream 472484 4744921 ~ 4746529 (+)
LOC117596306 NA non-coding downstream 591859 4864296 ~ 5074406 (+)
LOC117596386 NA non-coding downstream 823811 5096248 ~ 5156707 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other upstream 848045 3359377 ~ 3400825 (+)
LOC113545784 clhc1 other upstream 1862003 2364554 ~ 2386867 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other upstream 2498108 1715265 ~ 1750762 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other upstream 2616098 1619297 ~ 1632772 (+)
G389525 NA other upstream 3443654 804360 ~ 805216 (+)
LOC113545745 ptprd other downstream 191461 4463898 ~ 4856974 (+)
LOC113544283 fbxw7,LOC107745860 other downstream 1559107 5831544 ~ 5910592 (+)
lrba lrba other downstream 1766977 6039414 ~ 6239078 (+)
LOC113544406 LOC108260665,LOC108260638 other downstream 2342422 6614859 ~ 6618682 (+)
LOC117596330 NA other downstream 2624556 6896993 ~ 6900940 (+)

Expression


Co-expression Network