rtn4b (rtn4,LOC108412986,LOC105890919)


Basic Information

Item Value
gene id rtn4b
gene name rtn4,LOC108412986,LOC105890919
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 2388831 ~ 2413115 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945386.2
ATCATCGATGGTTCTTTCACTATTCCGCAGCAGCAGAGTGATTCGGCTTCAGCTAGTGTGCTGCTGCTCGTCTGTGCCGGCGGTCATCACTTTTTAAtctggaaaaaacacacaaaaagaccaAAACACGGTGCCGGTTTGCAGAATAAACCACAGGAGGTGAGAGAGGGGGGTTTTAAAAAGCGGGCATCGCCATcttcttgttaaaaaaatacctaactatatatttaaaatatatttaaatatataaagtcaCGTTTCCAAGATGGCAGACGCCGAGCAAGTTTCCTCCACAACTCCAAACGAAGTGGAAGAAGACGAGATGAAGCCTTGGCGTGAGGCAGGTTTCAGGGAAGCCCCAGCTCAGGACCTGGTTCAGGATGGAAATGTAGGTTTGTTTGCTGGAGAACAAGATGTTCATGATGTCCAGGATGTCCCAGAAGTGCAGAAAGCTCATGTGGAAGCTGCTGGAGAAGTGATCAGACAGGAGGAGATGGATCTCCTGCACACACCCGAGAACAAAGCCGAGACTGAATGTCTGGAGAAATCTGTTGATTTGATTTCTAAACCTGTGGAGTGTGAAAGCCCTGAGGAACCAGACAGCACTCAGATAGAGGATGAAATTACAGCAGTGGAGGAGGAAGCTGTTAGAGAGGCAGAAGAAGACACAGAAGAAGCCTTAAATCTACTGGATCTGAAAGATTCAGATGTGCAAGCTTTCACACAAGTGAAACAAGACCAAGATCCTGTGGTTTCATCTGCTACAGAGCTTCAGGAAGCTTTTAGATCAGCAGAGATCCAGGAGCAGCTGATGACCACAAAGCTTGAAGAGGAGATCTTCTTCAAATCCGAGCCTGAACCACAAGATCAGGACTTTCACATTAGTGCAAGGGTGAAAGAGGAAGCCTTTTCAGCTCCTGTTGAGTACGAGAAAGCTGTAAGTTCAGTCgtggaggagaaaaaagagcCAGAGAGGAGAACCCAGGTGGAGGAAAGATTCAGAGTCGACTCCGAGTCGACTCCCGCAGCCTCTGCGTCTCCATCAGCCCATGAACCCAGTCTTCCTTCctctgctgttgctgctgcttctttTCCGACTCTGATGCAATTTACTTCAGAATACGAGGATTCTTCATTAATAGCTAGCACACAGCCCAGCATCAAAACGACCATGGATTCATTCGGCAGTGATTCACCTTCCAGAAGCGTGCCCAGATACGACCCAGACGTATTAAACCAGTCCGATGATGACTTGATGTTTGAAACGAAAAGGAACCCTTTTCAAGACTTCTCGCCTGTCGAGAAACCCGCCAGCGAGTTCTCTCCTTTTGGAGAAACTACAGCAGACATCAGGGCAGCGAAGATGTCAGATAGTCCATCTCCAGATCTGGTCCAGGACGCCCATGATGGAGAGCTGCAGGACAGTTCGCCCATGCAGGACTACGAGCAGTCATTTGATTCCAGAGAAGCGGCCACCGAGTCTCTGAGGCAACAGCTTGCTTCGTCTGACTTTTTTGGGACTGCTCCAAAAGATAAAGAGGAATCTGGTTTGCCACCATCTCTCCCAGATATTTTGAAGTCTTCTCCACACAAACATGATAAAGTAGACTCGGGATCTTCAGAGGGAAGTCCTGATTTCAGTCCAGTCCATAGGAGCGGCAACGATTCGCCAAATGCTCCTTTCTCTGTGTCGGCAAACAATCCATTTGCTTTCGAAGCCAAGGTTCCTTTGGTTAAGGAGATGACTGAGGAGACTGAGGCAAGGGCTGCAGAAAGGGCGAGgattgaagaagaagaagaagaagaagaagaaaaggctTCTGAGCAAATGTTTGGCACATTTGATCTCGTTAAGGAGGCTGAAATTTCTCCAAAAGGCACCGAAACCACCATTGAAGACCAAGACGATTTTAAGACTTTGAGCCAAGATTCTGCTCAGATAGTTGACAAGTTCGAATGTCTCAGCTTCCCAACTGGAAAGACCCAAGAACACTCTGACTCTGAAAGCCCATCTGCAGATTCACTCTCTCCAGTCTTGGAGGCCATGGCAAAGAACCCAGCAAGTTTCCAGATCGAACCCGAGAAGAACATTGTGGAGGAAGCAGAGGCCGCGGATGAGGTTTCTGAGCAAGAGGTATCGTCTGAAGAGTTTGAGTTTGTCGAGAAGCCACCTCGAGGCGCCGTCGATGAGTTTTTGGAGACGCTTGAAAGCTCAAAGTTTGCCAAGGCATCTGAAATGGTCGATGATGACGAGGACACAGCCAAATTTACAGAGCAAGTGGAAGAGGCGAGCCCGGTTGTACAAGAAACAAAGAATCAAACTTATTTTCTCCTCACCGAACCGTCAAACGAGACCTCTCCGGCGAGAGGTAAGGCAGGCCTAGAGTTATCTGATTTCCAAGTGCCCTCCCAGGCTCCTTTGGCACCCAGTCCTGTGGTCAAACCCGAGACGGTGGCTGTGAAGAAAGTGGAACCTAAAGACCTCAAGCTGCCTAACCTGAATGCAGGAGCAGTGGTGGAGCTGCTGTACTGGCGCGATGTGAAGAACTCGGGCATCGTGTTCGGAGCGagcctcctgctcctgctgtcGCTCAGCGTGTGCAGCATCATCAGCGTGCTGTCCTACGTGGCTCTGGCGCTCCTCTCCGTCACCATCAGCTTCAGGATATACAAGGGCGTGCTGCAGGCCATCCAGAAGAGCGACGAAGGCCACCCGTTTAAGCTGTATCTGGAGCAGGACGTCTCTCTGCCTGATGAGGTGGTCCGCAAATACAGCGACGTAGCCCTCAGCCGGATCAACGCCGCCATCAACGAGCTGCGCCGCCTCTTCCTGGTCGAGGACCTGGTCGATTCCCTGAAGtTTGCTGTGCTCATGTGGATCCTGACGTACGTCGGTGCCTTGTTCAACGGACTCACTCTTCTCATTCTGGgtcTGGTTGCGATGTTCACCTGCCCAGTAGTCTATGAAAAACATCAGGCACAGATCGACCATTACATCGCCTTGGTGAGGAACCAGGTGAAGGATATTGTTGAAAAGATCCAGGCTAAAATCCCGGGTGCGAAGAAGAAGGTGGAGTGAAAGGCGTTCAGTTCGGAGGATCGGGGTTTTCCGTGCCCTGTTCCACTCTCTTATTTTCACAACTCTCTCCACTACACAAGCCATCACATCCAGTGGAAATTcttctttctgcctttttttttttttttttctcttcataaCCAGTCGCTACGATGAAGTTGTAAACCGTTTTGAGCCACTACTTATTTATCTCGACACACTGACTGGTATGATAAGACAAGACTCGTGTTTCCTGACAGAGCGATTATAGTATTCCATTAACTGGGTTTGtcgtcgtcgtcatcatcatcatctaggTCCGTATGTGTTTCAgaaataattcaattcatttacttttttttttttaaatgagggAGAATTTATGGTATCGTTTTTTGAGGCAAAAACCTTGGTatgtgtccatttttttttttttgggtatgATTTAGTGTTCCTGTAATTGTACTGTTTTATTGATGAACTGTGTAGAAACCTTTCACAAAAAGCTTCTCGCTCTCTTCAAGTGGCTCTTGTGTTGTACCTTGCAAAAGAGTTGCTCCATAAGCACTTCATGCTTCCGAGTATTTCTAGGCGATTTAGACTCATACTAAGAGATAAGAGCATACACATATTATCGAGACGCCATTTCACCTCATCGCAGCTTATTTAGTGAAATCTCTGGAACGGAACGAACGAAAAACGTTTACAAGACATTTGACTtagagaaatatttaaaaaaaaaaaaaaaaagttgtttatttGTGGACCCAATACCTAAAGCTGCAACGTTATGTAACATGACTAAACACATTGTTTGTTATGCAAGTAATTGTGAATGATACTTCATACGGTCGTGGTGAACATCTGTGGAATGCATTGTGAAATGTAAAACAAGCACCAATAAAGCTTCTAGACGAAT
>XM_026945387.2
ATCATCGATGGTTCTTTCACTATTCCGCAGCAGCAGAGTGATTCGGCTTCAGCTAGTGTGCTGCTGCTCGTCTGTGCCGGCGGTCATCACTTTTTAAtctggaaaaaacacacaaaaagaccaAAACACGGTGCCGGTTTGCAGAATAAACCACAGGAGtcaCGTTTCCAAGATGGCAGACGCCGAGCAAGTTTCCTCCACAACTCCAAACGAAGTGGAAGAAGACGAGATGAAGCCTTGGCGTGAGGCAGGTTTCAGGGAAGCCCCAGCTCAGGACCTGGTTCAGGATGGAAATGTAGGTTTGTTTGCTGGAGAACAAGATGTTCATGATGTCCAGGATGTCCCAGAAGTGCAGAAAGCTCATGTGGAAGCTGCTGGAGAAGTGATCAGACAGGAGGAGATGGATCTCCTGCACACACCCGAGAACAAAGCCGAGACTGAATGTCTGGAGAAATCTGTTGATTTGATTTCTAAACCTGTGGAGTGTGAAAGCCCTGAGGAACCAGACAGCACTCAGATAGAGGATGAAATTACAGCAGTGGAGGAGGAAGCTGTTAGAGAGGCAGAAGAAGACACAGAAGAAGCCTTAAATCTACTGGATCTGAAAGATTCAGATGTGCAAGCTTTCACACAAGTGAAACAAGACCAAGATCCTGTGGTTTCATCTGCTACAGAGCTTCAGGAAGCTTTTAGATCAGCAGAGATCCAGGAGCAGCTGATGACCACAAAGCTTGAAGAGGAGATCTTCTTCAAATCCGAGCCTGAACCACAAGATCAGGACTTTCACATTAGTGCAAGGGTGAAAGAGGAAGCCTTTTCAGCTCCTGTTGAGTACGAGAAAGCTGTAAGTTCAGTCgtggaggagaaaaaagagcCAGAGAGGAGAACCCAGGTGGAGGAAAGATTCAGAGTCGACTCCGAGTCGACTCCCGCAGCCTCTGCGTCTCCATCAGCCCATGAACCCAGTCTTCCTTCctctgctgttgctgctgcttctttTCCGACTCTGATGCAATTTACTTCAGAATACGAGGATTCTTCATTAATAGCTAGCACACAGCCCAGCATCAAAACGACCATGGATTCATTCGGCAGTGATTCACCTTCCAGAAGCGTGCCCAGATACGACCCAGACGTATTAAACCAGTCCGATGATGACTTGATGTTTGAAACGAAAAGGAACCCTTTTCAAGACTTCTCGCCTGTCGAGAAACCCGCCAGCGAGTTCTCTCCTTTTGGAGAAACTACAGCAGACATCAGGGCAGCGAAGATGTCAGATAGTCCATCTCCAGATCTGGTCCAGGACGCCCATGATGGAGAGCTGCAGGACAGTTCGCCCATGCAGGACTACGAGCAGTCATTTGATTCCAGAGAAGCGGCCACCGAGTCTCTGAGGCAACAGCTTGCTTCGTCTGACTTTTTTGGGACTGCTCCAAAAGATAAAGAGGAATCTGGTTTGCCACCATCTCTCCCAGATATTTTGAAGTCTTCTCCACACAAACATGATAAAGTAGACTCGGGATCTTCAGAGGGAAGTCCTGATTTCAGTCCAGTCCATAGGAGCGGCAACGATTCGCCAAATGCTCCTTTCTCTGTGTCGGCAAACAATCCATTTGCTTTCGAAGCCAAGGTTCCTTTGGTTAAGGAGATGACTGAGGAGACTGAGGCAAGGGCTGCAGAAAGGGCGAGgattgaagaagaagaagaagaagaagaagaaaaggctTCTGAGCAAATGTTTGGCACATTTGATCTCGTTAAGGAGGCTGAAATTTCTCCAAAAGGCACCGAAACCACCATTGAAGACCAAGACGATTTTAAGACTTTGAGCCAAGATTCTGCTCAGATAGTTGACAAGTTCGAATGTCTCAGCTTCCCAACTGGAAAGACCCAAGAACACTCTGACTCTGAAAGCCCATCTGCAGATTCACTCTCTCCAGTCTTGGAGGCCATGGCAAAGAACCCAGCAAGTTTCCAGATCGAACCCGAGAAGAACATTGTGGAGGAAGCAGAGGCCGCGGATGAGGTTTCTGAGCAAGAGGTATCGTCTGAAGAGTTTGAGTTTGTCGAGAAGCCACCTCGAGGCGCCGTCGATGAGTTTTTGGAGACGCTTGAAAGCTCAAAGTTTGCCAAGGCATCTGAAATGGTCGATGATGACGAGGACACAGCCAAATTTACAGAGCAAGTGGAAGAGGCGAGCCCGGTTGTACAAGAAACAAAGAATCAAACTTATTTTCTCCTCACCGAACCGTCAAACGAGACCTCTCCGGCGAGAGGTAAGGCAGGCCTAGAGTTATCTGATTTCCAAGTGCCCTCCCAGGCTCCTTTGGCACCCAGTCCTGTGGTCAAACCCGAGACGGTGGCTGTGAAGAAAGTGGAACCTAAAGACCTCAAGCTGCCTAACCTGAATGCAGGAGCAGTGGTGGAGCTGCTGTACTGGCGCGATGTGAAGAACTCGGGCATCGTGTTCGGAGCGagcctcctgctcctgctgtcGCTCAGCGTGTGCAGCATCATCAGCGTGCTGTCCTACGTGGCTCTGGCGCTCCTCTCCGTCACCATCAGCTTCAGGATATACAAGGGCGTGCTGCAGGCCATCCAGAAGAGCGACGAAGGCCACCCGTTTAAGCTGTATCTGGAGCAGGACGTCTCTCTGCCTGATGAGGTGGTCCGCAAATACAGCGACGTAGCCCTCAGCCGGATCAACGCCGCCATCAACGAGCTGCGCCGCCTCTTCCTGGTCGAGGACCTGGTCGATTCCCTGAAGtTTGCTGTGCTCATGTGGATCCTGACGTACGTCGGTGCCTTGTTCAACGGACTCACTCTTCTCATTCTGGgtcTGGTTGCGATGTTCACCTGCCCAGTAGTCTATGAAAAACATCAGGCACAGATCGACCATTACATCGCCTTGGTGAGGAACCAGGTGAAGGATATTGTTGAAAAGATCCAGGCTAAAATCCCGGGTGCGAAGAAGAAGGTGGAGTGAAAGGCGTTCAGTTCGGAGGATCGGGGTTTTCCGTGCCCTGTTCCACTCTCTTATTTTCACAACTCTCTCCACTACACAAGCCATCACATCCAGTGGAAATTcttctttctgcctttttttttttttttttctcttcataaCCAGTCGCTACGATGAAGTTGTAAACCGTTTTGAGCCACTACTTATTTATCTCGACACACTGACTGGTATGATAAGACAAGACTCGTGTTTCCTGACAGAGCGATTATAGTATTCCATTAACTGGGTTTGtcgtcgtcgtcatcatcatcatctaggTCCGTATGTGTTTCAgaaataattcaattcatttacttttttttttttaaatgagggAGAATTTATGGTATCGTTTTTTGAGGCAAAAACCTTGGTatgtgtccatttttttttttttgggtatgATTTAGTGTTCCTGTAATTGTACTGTTTTATTGATGAACTGTGTAGAAACCTTTCACAAAAAGCTTCTCGCTCTCTTCAAGTGGCTCTTGTGTTGTACCTTGCAAAAGAGTTGCTCCATAAGCACTTCATGCTTCCGAGTATTTCTAGGCGATTTAGACTCATACTAAGAGATAAGAGCATACACATATTATCGAGACGCCATTTCACCTCATCGCAGCTTATTTAGTGAAATCTCTGGAACGGAACGAACGAAAAACGTTTACAAGACATTTGACTtagagaaatatttaaaaaaaaaaaaaaaaagttgtttatttGTGGACCCAATACCTAAAGCTGCAACGTTATGTAACATGACTAAACACATTGTTTGTTATGCAAGTAATTGTGAATGATACTTCATACGGTCGTGGTGAACATCTGTGGAATGCATTGTGAAATGTAAAACAAGCACCAATAAAGCTTCTAGACGAAT
>XM_026945388.2
TTTCACTATTCCGCAGCAGCAGAGTGATTCGGCTTCAGCTAGTGTGCTGCTGCTCGTCTGTGCCGGCGGTCATCACTTTTTAAtctggaaaaaacacacaaaaagaccaAAACACGGTGCCGGTTTGCAGAATAAACCACAGGAGGTGAGAGAGGGGGGTTTTAAAAAGCGGGCATCGCCATcttcttgttaaaaaaatacctaactatatatttaaaatatatttaaatatataaagtcaCGTTTCCAAGATGGCAGACGCCGAGCAAGTTTCCTCCACAACTCCAAACGAAGTGGAAGAAGACGAGATGAAGCCTTGGCGTGAGGCAGGTTTCAGGGAAGCCCCAGCTCAGGACCTGGTTCAGGATGGAAATGTAGGTTTGTTTGCTGGAGAACAAGATGTTCATGATGTCCAGGATGTCCCAGAAGTGCAGAAAGCTCATGTGGAAGCTGCTGGAGAAGTGATCAGACAGGAGGAGATGGATCTCCTGCACACACCCGAGAACAAAGCCGAGACTGAATGTCTGGAGAAATCTGTTGATTTGATTTCTAAACCTGTGGAGTGTGAAAGCCCTGAGGAACCAGACAGCACTCAGATAGAGGATGAAATTACAGCAGTGGAGGAGGAAGCTGTTAGAGAGGCAGAAGAAGACACAGAAGAAGCCTTAAATCTACTGGATCTGAAAGATTCAGATGTGCAAGCTTTCACACAAGTGAAACAAGACCAAGATCCTGTGGTTTCATCTGCTACAGAGCTTCAGGAAGCTTTTAGATCAGCAGAGATCCAGGAGCAGCTGATGACCACAAAGCTTGAAGAGGAGATCTTCTTCAAATCCGAGCCTGAACCACAAGATCAGGACTTTCACATTAGTGCAAGGGTGAAAGAGGAAGCCTTTTCAGCTCCTGTTGAGTACGAGAAAGCTGTAAGTTCAGTCgtggaggagaaaaaagagcCAGAGAGGAGAACCCAGGTGGAGGAAAGATTCAGAGTCGACTCCGAGTCGACTCCCGCAGCCTCTGCGTCTCCATCAGCCCATGAACCCAGTCTTCCTTCctctgctgttgctgctgcttctttTCCGACTCTGATGCAATTTACTTCAGTGGTGGAGCTGCTGTACTGGCGCGATGTGAAGAACTCGGGCATCGTGTTCGGAGCGagcctcctgctcctgctgtcGCTCAGCGTGTGCAGCATCATCAGCGTGCTGTCCTACGTGGCTCTGGCGCTCCTCTCCGTCACCATCAGCTTCAGGATATACAAGGGCGTGCTGCAGGCCATCCAGAAGAGCGACGAAGGCCACCCGTTTAAGCTGTATCTGGAGCAGGACGTCTCTCTGCCTGATGAGGTGGTCCGCAAATACAGCGACGTAGCCCTCAGCCGGATCAACGCCGCCATCAACGAGCTGCGCCGCCTCTTCCTGGTCGAGGACCTGGTCGATTCCCTGAAGtTTGCTGTGCTCATGTGGATCCTGACGTACGTCGGTGCCTTGTTCAACGGACTCACTCTTCTCATTCTGGgtcTGGTTGCGATGTTCACCTGCCCAGTAGTCTATGAAAAACATCAGGCACAGATCGACCATTACATCGCCTTGGTGAGGAACCAGGTGAAGGATATTGTTGAAAAGATCCAGGCTAAAATCCCGGGTGCGAAGAAGAAGGTGGAGTGAAAGGCGTTCAGTTCGGAGGATCGGGGTTTTCCGTGCCCTGTTCCACTCTCTTATTTTCACAACTCTCTCCACTACACAAGCCATCACATCCAGTGGAAATTcttctttctgcctttttttttttttttttctcttcataaCCAGTCGCTACGATGAAGTTGTAAACCGTTTTGAGCCACTACTTATTTATCTCGACACACTGACTGGTATGATAAGACAAGACTCGTGTTTCCTGACAGAGCGATTATAGTATTCCATTAACTGGGTTTGtcgtcgtcgtcatcatcatcatctaggTCCGTATGTGTTTCAgaaataattcaattcatttacttttttttttttaaatgagggAGAATTTATGGTATCGTTTTTTGAGGCAAAAACCTTGGTatgtgtccatttttttttttttgggtatgATTTAGTGTTCCTGTAATTGTACTGTTTTATTGATGAACTGTGTAGAAACCTTTCACAAAAAGCTTCTCGCTCTCTTCAAGTGGCTCTTGTGTTGTACCTTGCAAAAGAGTTGCTCCATAAGCACTTCATGCTTCCGAGTATTTCTAGGCGATTTAGACTCATACTAAGAGATAAGAGCATACACATATTATCGAGACGCCATTTCACCTCATCGCAGCTTATTTAGTGAAATCTCTGGAACGGAACGAACGAAAAACGTTTACAAGACATTTGACTtagagaaatatttaaaaaaaaaaaaaaaaagttgtttatttGTGGACCCAATACCTAAAGCTGCAACGTTATGTAACATGACTAAACACATTGTTTGTTATGCAAGTAATTGTGAATGATACTTCATACGGTCGTGGTGAACATCTGTGGAATGCATTGTGAAATGTAAAACAAGCACCAATAAAGCTTCTAGACGAAT
>XM_026945389.2
TTCACTATTCCGCAGCAGCAGAGTGATTCGGCTTCAGCTAGTGTGCTGCTGCTCGTCTGTGCCGGCGGTCATCACTTTTTAAtctggaaaaaacacacaaaaagaccaAAACACGGTGCCGGTTTGCAGAATAAACCACAGGAGGTGAGAGAGGGGGGTTTTAAAAAGCGGGCATCGCCATcttcttgttaaaaaaatacctaactatatatttaaaatatatttaaatatataaagtcaCGTTTCCAAGATGGCAGACGCCGAGCAAGTTTCCTCCACAACTCCAAACGAAGTGGAAGAAGACGAGATGAAGCCTTGGCGTGAGGCAGGTTTCAGGGAAGCCCCAGCTCAGGACCTGGTTCAGGATGGAAATGTAGGTTTGTTTGCTGGAGAACAAGATGTTCATGATGTCCAGGATGTCCCAGAAGTGCAGAAAGCTCATGTGGAAGCTGCTGGAGAAGTGATCAGACAGGAGGAGATGGATCTCCTGCACACACCCGAGAACAAAGCCGAGACTGAATGTCTGGAGAAATCTGTTGATTTGATTTCTAAACCTGTGGAGTGTGAAAGCCCTGAGGAACCAGACAGCACTCAGATAGAGGATGAAATTACAGCAGTGGAGGAGGAAGCTGTTAGAGAGGCAGAAGAAGACACAGAAGAAGCCTTAAATCTACTGGATCTGAAAGATTCAGATGTGCAAGCTTTCACACAAGTGAAACAAGACCAAGATCCTGTGGTTTCATCTGCTACAGAGCTTCAGGAAGCTTTTAGATCAGCAGAGATCCAGGAGCAGCTGATGACCACAAAGCTTGAAGAGGAGATCTTCTTCAAATCCGAGCCTGAACCACAAGATCAGGACTTTCACATTAGTGCAAGGGTGAAAGAGGAAGCCTTTTCAGCTCCTGTTGAGTACGAGAAAGCTGTAAGTTCAGTCgtggaggagaaaaaagagcCAGAGAGGAGAACCCAGGTGGAGGAAAGATTCAGAGTCGACTCCGAGTCGACTCCCGCAGCCTCTGCGTCTCCATCAGCCCTGGTGGAGCTGCTGTACTGGCGCGATGTGAAGAACTCGGGCATCGTGTTCGGAGCGagcctcctgctcctgctgtcGCTCAGCGTGTGCAGCATCATCAGCGTGCTGTCCTACGTGGCTCTGGCGCTCCTCTCCGTCACCATCAGCTTCAGGATATACAAGGGCGTGCTGCAGGCCATCCAGAAGAGCGACGAAGGCCACCCGTTTAAGCTGTATCTGGAGCAGGACGTCTCTCTGCCTGATGAGGTGGTCCGCAAATACAGCGACGTAGCCCTCAGCCGGATCAACGCCGCCATCAACGAGCTGCGCCGCCTCTTCCTGGTCGAGGACCTGGTCGATTCCCTGAAGtTTGCTGTGCTCATGTGGATCCTGACGTACGTCGGTGCCTTGTTCAACGGACTCACTCTTCTCATTCTGGgtcTGGTTGCGATGTTCACCTGCCCAGTAGTCTATGAAAAACATCAGGCACAGATCGACCATTACATCGCCTTGGTGAGGAACCAGGTGAAGGATATTGTTGAAAAGATCCAGGCTAAAATCCCGGGTGCGAAGAAGAAGGTGGAGTGAAAGGCGTTCAGTTCGGAGGATCGGGGTTTTCCGTGCCCTGTTCCACTCTCTTATTTTCACAACTCTCTCCACTACACAAGCCATCACATCCAGTGGAAATTcttctttctgcctttttttttttttttttctcttcataaCCAGTCGCTACGATGAAGTTGTAAACCGTTTTGAGCCACTACTTATTTATCTCGACACACTGACTGGTATGATAAGACAAGACTCGTGTTTCCTGACAGAGCGATTATAGTATTCCATTAACTGGGTTTGtcgtcgtcgtcatcatcatcatctaggTCCGTATGTGTTTCAgaaataattcaattcatttacttttttttttttaaatgagggAGAATTTATGGTATCGTTTTTTGAGGCAAAAACCTTGGTatgtgtccatttttttttttttgggtatgATTTAGTGTTCCTGTAATTGTACTGTTTTATTGATGAACTGTGTAGAAACCTTTCACAAAAAGCTTCTCGCTCTCTTCAAGTGGCTCTTGTGTTGTACCTTGCAAAAGAGTTGCTCCATAAGCACTTCATGCTTCCGAGTATTTCTAGGCGATTTAGACTCATACTAAGAGATAAGAGCATACACATATTATCGAGACGCCATTTCACCTCATCGCAGCTTATTTAGTGAAATCTCTGGAACGGAACGAACGAAAAACGTTTACAAGACATTTGACTtagagaaatatttaaaaaaaaaaaaaaaaagttgtttatttGTGGACCCAATACCTAAAGCTGCAACGTTATGTAACATGACTAAACACATTGTTTGTTATGCAAGTAATTGTGAATGATACTTCATACGGTCGTGGTGAACATCTGTGGAATGCATTGTGAAATGTAAAACAAGCACCAATAAAGCTTCTAGACGAAT
>XM_026945390.2
agagagagagagatcactgCAGTCATCACAGTTAAGGCAGCGTTCCTTCTCCTCATTACAACTTGTTCCCTTCGCCCCACCCGCCACTGCAGCTCCACGCTCCTCACCCGGCCTGGAATGCCAAGCTGATCCCCTGCAGACTTGCCCTAATCATCCACGGGGGAAACCATGGACAATCAGGACAATCAAGACAATCAAGACAAACAGGACAAACAGGAGTGCCACCCTTCACCAAACTGGAGAGAAAAGGTGGTGGAGCTGCTGTACTGGCGCGATGTGAAGAACTCGGGCATCGTGTTCGGAGCGagcctcctgctcctgctgtcGCTCAGCGTGTGCAGCATCATCAGCGTGCTGTCCTACGTGGCTCTGGCGCTCCTCTCCGTCACCATCAGCTTCAGGATATACAAGGGCGTGCTGCAGGCCATCCAGAAGAGCGACGAAGGCCACCCGTTTAAGCTGTATCTGGAGCAGGACGTCTCTCTGCCTGATGAGGTGGTCCGCAAATACAGCGACGTAGCCCTCAGCCGGATCAACGCCGCCATCAACGAGCTGCGCCGCCTCTTCCTGGTCGAGGACCTGGTCGATTCCCTGAAGtTTGCTGTGCTCATGTGGATCCTGACGTACGTCGGTGCCTTGTTCAACGGACTCACTCTTCTCATTCTGGgtcTGGTTGCGATGTTCACCTGCCCAGTAGTCTATGAAAAACATCAGGCACAGATCGACCATTACATCGCCTTGGTGAGGAACCAGGTGAAGGATATTGTTGAAAAGATCCAGGCTAAAATCCCGGGTGCGAAGAAGAAGGTGGAGTGAAAGGCGTTCAGTTCGGAGGATCGGGGTTTTCCGTGCCCTGTTCCACTCTCTTATTTTCACAACTCTCTCCACTACACAAGCCATCACATCCAGTGGAAATTcttctttctgcctttttttttttttttttctcttcataaCCAGTCGCTACGATGAAGTTGTAAACCGTTTTGAGCCACTACTTATTTATCTCGACACACTGACTGGTATGATAAGACAAGACTCGTGTTTCCTGACAGAGCGATTATAGTATTCCATTAACTGGGTTTGtcgtcgtcgtcatcatcatcatctaggTCCGTATGTGTTTCAgaaataattcaattcatttacttttttttttttaaatgagggAGAATTTATGGTATCGTTTTTTGAGGCAAAAACCTTGGTatgtgtccatttttttttttttgggtatgATTTAGTGTTCCTGTAATTGTACTGTTTTATTGATGAACTGTGTAGAAACCTTTCACAAAAAGCTTCTCGCTCTCTTCAAGTGGCTCTTGTGTTGTACCTTGCAAAAGAGTTGCTCCATAAGCACTTCATGCTTCCGAGTATTTCTAGGCGATTTAGACTCATACTAAGAGATAAGAGCATACACATATTATCGAGACGCCATTTCACCTCATCGCAGCTTATTTAGTGAAATCTCTGGAACGGAACGAACGAAAAACGTTTACAAGACATTTGACTtagagaaatatttaaaaaaaaaaaaaaaaagttgtttatttGTGGACCCAATACCTAAAGCTGCAACGTTATGTAACATGACTAAACACATTGTTTGTTATGCAAGTAATTGTGAATGATACTTCATACGGTCGTGGTGAACATCTGTGGAATGCATTGTGAAATGTAAAACAAGCACCAATAAAGCTTCTAGACGAAT
>XM_026945391.2
CCCTTTCTGAGTGAAACGAGCTTTTGTTGTACCACGTGAACGCGCGCCGAGCAGCAGGACGCGTGTGCGCGCTTCGTGCGCGCGCTCCCTCCCTCGGTTGCGTTGGTGCGGGCGGCGCAAGATGGACGCCAAACGGGTGGTGGAGCTGCTGTACTGGCGCGATGTGAAGAACTCGGGCATCGTGTTCGGAGCGagcctcctgctcctgctgtcGCTCAGCGTGTGCAGCATCATCAGCGTGCTGTCCTACGTGGCTCTGGCGCTCCTCTCCGTCACCATCAGCTTCAGGATATACAAGGGCGTGCTGCAGGCCATCCAGAAGAGCGACGAAGGCCACCCGTTTAAGCTGTATCTGGAGCAGGACGTCTCTCTGCCTGATGAGGTGGTCCGCAAATACAGCGACGTAGCCCTCAGCCGGATCAACGCCGCCATCAACGAGCTGCGCCGCCTCTTCCTGGTCGAGGACCTGGTCGATTCCCTGAAGtTTGCTGTGCTCATGTGGATCCTGACGTACGTCGGTGCCTTGTTCAACGGACTCACTCTTCTCATTCTGGgtcTGGTTGCGATGTTCACCTGCCCAGTAGTCTATGAAAAACATCAGGCACAGATCGACCATTACATCGCCTTGGTGAGGAACCAGGTGAAGGATATTGTTGAAAAGATCCAGGCTAAAATCCCGGGTGCGAAGAAGAAGGTGGAGTGAAAGGCGTTCAGTTCGGAGGATCGGGGTTTTCCGTGCCCTGTTCCACTCTCTTATTTTCACAACTCTCTCCACTACACAAGCCATCACATCCAGTGGAAATTcttctttctgcctttttttttttttttttctcttcataaCCAGTCGCTACGATGAAGTTGTAAACCGTTTTGAGCCACTACTTATTTATCTCGACACACTGACTGGTATGATAAGACAAGACTCGTGTTTCCTGACAGAGCGATTATAGTATTCCATTAACTGGGTTTGtcgtcgtcgtcatcatcatcatctaggTCCGTATGTGTTTCAgaaataattcaattcatttacttttttttttttaaatgagggAGAATTTATGGTATCGTTTTTTGAGGCAAAAACCTTGGTatgtgtccatttttttttttttgggtatgATTTAGTGTTCCTGTAATTGTACTGTTTTATTGATGAACTGTGTAGAAACCTTTCACAAAAAGCTTCTCGCTCTCTTCAAGTGGCTCTTGTGTTGTACCTTGCAAAAGAGTTGCTCCATAAGCACTTCATGCTTCCGAGTATTTCTAGGCGATTTAGACTCATACTAAGAGATAAGAGCATACACATATTATCGAGACGCCATTTCACCTCATCGCAGCTTATTTAGTGAAATCTCTGGAACGGAACGAACGAAAAACGTTTACAAGACATTTGACTtagagaaatatttaaaaaaaaaaaaaaaaagttgtttatttGTGGACCCAATACCTAAAGCTGCAACGTTATGTAACATGACTAAACACATTGTTTGTTATGCAAGTAATTGTGAATGATACTTCATACGGTCGTGGTGAACATCTGTGGAATGCATTGTGAAATGTAAAACAAGCACCAATAAAGCTTCTAGACGAAT
>XM_034301230.1
ATCATCGATGGTTCTTTCACTATTCCGCAGCAGCAGAGTGATTCGGCTTCAGCTAGTGTGCTGCTGCTCGTCTGTGCCGGCGGTCATCACTTTTTAAtctggaaaaaacacacaaaaagaccaAAACACGGTGCCGGTTTGCAGAATAAACCACAGGAGGTGAGAGAGGGGGGTTTTAAAAAGCGGGCATCGCCATcttcttgttaaaaaaatacctaactatatatttaaaatatatttaaatatataaagtcaCGTTTCCAAGATGGCAGACGCCGAGCAAGTTTCCTCCACAACTCCAAACGAAGTGGAAGAAGACGAGATGAAGCCTTGGCGTGAGGCAGGTTTCAGGGAAGCCCCAGCTCAGGACCTGGTTCAGGATGGAAATGTAGGTTTGTTTGCTGGAGAACAAGATGTTCATGATGTCCAGGATGTCCCAGAAGTGCAGAAAGCTCATGTGGAAGCTGCTGGAGAAGTGATCAGACAGGAGGAGATGGATCTCCTGCACACACCCGAGAACAAAGCCGAGACTGAATGTCTGGAGAAATCTGTTGATTTGATTTCTAAACCTGTGGAGTGTGAAAGCCCTGAGGAACCAGACAGCACTCAGATAGAGGATGAAATTACAGCAGTGGAGGAGGAAGCTGTTAGAGAGGCAGAAGAAGACACAGAAGAAGCCTTAAATCTACTGGATCTGAAAGATTCAGATGTGCAAGCTTTCACACAAGTGAAACAAGACCAAGATCCTGTGGTTTCATCTGCTACAGAGCTTCAGGAAGCTTTTAGATCAGCAGAGATCCAGGAGCAGCTGATGACCACAAAGCTTGAAGAGGAGATCTTCTTCAAATCCGAGCCTGAACCACAAGATCAGGACTTTCACATTAGTGCAAGGGTGAAAGAGGAAGCCTTTTCAGCTCCTGTTGAGTACGAGAAAGCTGTAAGTTCAGTCgtggaggagaaaaaagagcCAGAGAGGAGAACCCAGGTGGAGGAAAGATTCAGAGTCGACTCCGAGTCGACTCCCGCAGCCTCTGCGTCTCCATCAGCCCAATACGAGGATTCTTCATTAATAGCTAGCACACAGCCCAGCATCAAAACGACCATGGATTCATTCGGCAGTGATTCACCTTCCAGAAGCGTGCCCAGATACGACCCAGACGTATTAAACCAGTCCGATGATGACTTGATGTTTGAAACGAAAAGGAACCCTTTTCAAGACTTCTCGCCTGTCGAGAAACCCGCCAGCGAGTTCTCTCCTTTTGGAGAAACTACAGCAGACATCAGGGCAGCGAAGATGTCAGATAGTCCATCTCCAGATCTGGTCCAGGACGCCCATGATGGAGAGCTGCAGGACAGTTCGCCCATGCAGGACTACGAGCAGTCATTTGATTCCAGAGAAGCGGCCACCGAGTCTCTGAGGCAACAGCTTGCTTCGTCTGACTTTTTTGGGACTGCTCCAAAAGATAAAGAGGAATCTGGTTTGCCACCATCTCTCCCAGATATTTTGAAGTCTTCTCCACACAAACATGATAAAGTAGACTCGGGATCTTCAGAGGGAAGTCCTGATTTCAGTCCAGTCCATAGGAGCGGCAACGATTCGCCAAATGCTCCTTTCTCTGTGTCGGCAAACAATCCATTTGCTTTCGAAGCCAAGGTTCCTTTGGTTAAGGAGATGACTGAGGAGACTGAGGCAAGGGCTGCAGAAAGGGCGAGgattgaagaagaagaagaagaagaagaagaaaaggctTCTGAGCAAATGTTTGGCACATTTGATCTCGTTAAGGAGGCTGAAATTTCTCCAAAAGGCACCGAAACCACCATTGAAGACCAAGACGATTTTAAGACTTTGAGCCAAGATTCTGCTCAGATAGTTGACAAGTTCGAATGTCTCAGCTTCCCAACTGGAAAGACCCAAGAACACTCTGACTCTGAAAGCCCATCTGCAGATTCACTCTCTCCAGTCTTGGAGGCCATGGCAAAGAACCCAGCAAGTTTCCAGATCGAACCCGAGAAGAACATTGTGGAGGAAGCAGAGGCCGCGGATGAGGTTTCTGAGCAAGAGGTATCGTCTGAAGAGTTTGAGTTTGTCGAGAAGCCACCTCGAGGCGCCGTCGATGAGTTTTTGGAGACGCTTGAAAGCTCAAAGTTTGCCAAGGCATCTGAAATGGTCGATGATGACGAGGACACAGCCAAATTTACAGAGCAAGTGGAAGAGGCGAGCCCGGTTGTACAAGAAACAAAGAATCAAACTTATTTTCTCCTCACCGAACCGTCAAACGAGACCTCTCCGGCGAGAGGTAAGGCAGGCCTAGAGTTATCTGATTTCCAAGTGCCCTCCCAGGCTCCTTTGGCACCCAGTCCTGTGGTCAAACCCGAGACGGTGGCTGTGAAGAAAGTGGAACCTAAAGACCTCAAGCTGCCTAACCTGAATGCAGGAGCAGTGGTGGAGCTGCTGTACTGGCGCGATGTGAAGAACTCGGGCATCGTGTTCGGAGCGagcctcctgctcctgctgtcGCTCAGCGTGTGCAGCATCATCAGCGTGCTGTCCTACGTGGCTCTGGCGCTCCTCTCCGTCACCATCAGCTTCAGGATATACAAGGGCGTGCTGCAGGCCATCCAGAAGAGCGACGAAGGCCACCCGTTTAAGCTGTATCTGGAGCAGGACGTCTCTCTGCCTGATGAGGTGGTCCGCAAATACAGCGACGTAGCCCTCAGCCGGATCAACGCCGCCATCAACGAGCTGCGCCGCCTCTTCCTGGTCGAGGACCTGGTCGATTCCCTGAAGtTTGCTGTGCTCATGTGGATCCTGACGTACGTCGGTGCCTTGTTCAACGGACTCACTCTTCTCATTCTGGgtcTGGTTGCGATGTTCACCTGCCCAGTAGTCTATGAAAAACATCAGGCACAGATCGACCATTACATCGCCTTGGTGAGGAACCAGGTGAAGGATATTGTTGAAAAGATCCAGGCTAAAATCCCGGGTGCGAAGAAGAAGGTGGAGTGAAAGGCGTTCAGTTCGGAGGATCGGGGTTTTCCGTGCCCTGTTCCACTCTCTTATTTTCACAACTCTCTCCACTACACAAGCCATCACATCCAGTGGAAATTcttctttctgcctttttttttttttttttctcttcataaCCAGTCGCTACGATGAAGTTGTAAACCGTTTTGAGCCACTACTTATTTATCTCGACACACTGACTGGTATGATAAGACAAGACTCGTGTTTCCTGACAGAGCGATTATAGTATTCCATTAACTGGGTTTGtcgtcgtcgtcatcatcatcatctaggTCCGTATGTGTTTCAgaaataattcaattcatttacttttttttttttaaatgagggAGAATTTATGGTATCGTTTTTTGAGGCAAAAACCTTGGTatgtgtccatttttttttttttgggtatgATTTAGTGTTCCTGTAATTGTACTGTTTTATTGATGAACTGTGTAGAAACCTTTCACAAAAAGCTTCTCGCTCTCTTCAAGTGGCTCTTGTGTTGTACCTTGCAAAAGAGTTGCTCCATAAGCACTTCATGCTTCCGAGTATTTCTAGGCGATTTAGACTCATACTAAGAGATAAGAGCATACACATATTATCGAGACGCCATTTCACCTCATCGCAGCTTATTTAGTGAAATCTCTGGAACGGAACGAACGAAAAACGTTTACAAGACATTTGACTtagagaaatatttaaaaaaaaaaaaaaaaagttgtttatttGTGGACCCAATACCTAAAGCTGCAACGTTATGTAACATGACTAAACACATTGTTTGTTATGCAAGTAATTGTGAATGATACTTCATACGGTCGTGGTGAACATCTGTGGAATGCATTGTGAAATGTAAAACAAGCACCAATAAAGCTTCTAGACGAAT

Function

symbol description
rtn4 Enables cadherin binding activity; protein homodimerization activity; and ubiquitin protein ligase binding activity. Involved in several processes, including cell adhesion involved in sprouting angiogenesis; endoplasmic reticulum tubular network organization; and positive regulation of signal transduction. Acts upstream of or within regulation of cell migration. Located in several cellular components, including cell junction; endoplasmic reticulum tubular network membrane; and nuclear envelope. Is integral component of endoplasmic reticulum membrane.

NR:

description
PREDICTED: reticulon-1-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20720 RTN4; reticulon-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945386.2 True 3977 mRNA 0.47 9 2388831 2413115
XM_026945387.2 False 3884 mRNA 0.47 10 2388831 2413115
XM_026945388.2 False 2568 mRNA 0.45 8 2388845 2413115
XM_026945389.2 False 2498 mRNA 0.45 7 2388846 2413115
XM_026945390.2 False 1714 mRNA 0.46 7 2397109 2413115
XM_026945391.2 False 1601 mRNA 0.46 7 2401535 2413115
XM_034301230.1 False 3908 mRNA 0.47 8 2388831 2413115

Neighbor

gene id symbol gene type direction distance location
LOC113545799 LOC100305044 coding upstream 52944 2320342 ~ 2335887 (+)
LOC113545749 nrxn1,LOC108443646 coding upstream 202914 1873316 ~ 2185917 (+)
lrrtm1 lrrtm1,LOC107689474,LOC107706126,LOC107551676,LOC107558618 coding upstream 1068755 1315659 ~ 1320076 (+)
suclg1 suclg1 coding upstream 1409505 961694 ~ 979326 (+)
LOC113545722 NA coding upstream 1438007 941961 ~ 950824 (+)
ppp1r21 ppp1r21 coding downstream 1965 2415080 ~ 2429990 (+)
zgc:64201 LOC108260727,LOC108260508,LOC108429269,LOC105890925 coding downstream 19748 2432863 ~ 2438882 (+)
LOC113545751 mpdz coding downstream 880076 3293191 ~ 3333177 (+)
nrxn2b nrxn2b,LOC108261005,LOC108427447,LOC107732688,LOC107679953 coding downstream 1143238 3556353 ~ 4147068 (+)
c28h11orf68 c29h11orf68,cunh11orf68,LOC103032366 coding downstream 1803913 4217028 ~ 4219878 (+)
G390411 NA non-coding upstream 32037 2356333 ~ 2356794 (+)
G390077 NA non-coding upstream 443376 1944549 ~ 1945455 (+)
G390023 NA non-coding upstream 531930 1856490 ~ 1856901 (+)
G390020 LOC108260493 non-coding upstream 534662 1842073 ~ 1854169 (+)
G390019 mogs,LOC108260492,LOC108260493,LOC106602766 non-coding upstream 538257 1836764 ~ 1850574 (+)
G390456 ppp4r3b non-coding downstream 92950 2506065 ~ 2506498 (+)
LOC117596362 NA non-coding downstream 723513 3136628 ~ 3171123 (+)
G391143 NA non-coding downstream 987813 3400928 ~ 3401783 (+)
LOC113545714 NA non-coding downstream 1735920 4149035 ~ 4175902 (+)
G391386 NA non-coding downstream 1800129 4213244 ~ 4213828 (+)
LOC113545784 clhc1 other upstream 1964 2364554 ~ 2386867 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other upstream 638069 1715265 ~ 1750762 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other upstream 756059 1619297 ~ 1632772 (+)
G389438 LOC108260589,LOC108260518,LOC108260515 other upstream 1438424 402002 ~ 950407 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other downstream 946262 3359377 ~ 3400825 (+)
LOC113545745 ptprd other downstream 2050783 4463898 ~ 4856974 (+)
LOC113544283 fbxw7,LOC107745860 other downstream 3418429 5831544 ~ 5910592 (+)
lrba lrba other downstream 3626299 6039414 ~ 6239078 (+)
LOC113544406 LOC108260665,LOC108260638 other downstream 4201744 6614859 ~ 6618682 (+)

Expression


Co-expression Network