LOC113544353 (LOC108260790,LOC108260789)


Basic Information

Item Value
gene id LOC113544353
gene name LOC108260790,LOC108260789
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8329665 ~ 8350126 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301039.1
ATGTATGAATATCAGAATAAAAAAGAGCGCAGGGTCACGCAGGCCTGGGACGCTGCTCGGGAAACACCTATTATTGCAGATGAGCAAAAACCTCGCAAGCTTGTGAGCTTCATCCAAATCATCACATGTACTCTTGTGGGAATCTTGGTGTTTGGGCTAGCCTTCTTCAGCAAAGCATCTCTGTTGCTATTAATAAACCTTTGCAGTGGAACATCAACAACCATAGACACCAAACCCTATGCTCTCCTCTTCATTGGGTGCCTTCTAATTGctccaagtgttttactgctgATCAAAAGCATTTGGAAAATTACTTTTAAGGATTCAAAAACCCCATCGACGCAAACTTTGCTATGGATTATTTCAGTGGAAACTTTGGTGGCTCTTGGATCTTCCATCCTAACCATGATATCTATGCCCCGATTTGACATCCTGACCAACGTGATGCTTCTGAATGGCATTGCCACATTATCAGCCATTCTGCAGGTGGTCGCAAATGCAGTCGCGCACGGAAGGAGACGATTTATTGCAACGTCGttagctgctgttgttttcttaaTTGCAGGTTTTTGCTTCTTTGCTGTTAACTATCTCAGAAAGCAGAACATGGTGCTATTCGTGGGTTTAGCCATAGGAGGCACTTTCCTGGTCTCTTTGAACTGGTGGGAGAACTACGCCATGCTTTTCCGCATCGTCTTCTTCCAGAACACAATCCGGGACATAAAAAGGTCCCACAACTTTGTGAACATTGTGGCTAGCTTGGTGCGAATTATTGTGACCTTCACTGTCCTTGGAGCTTATGTGAAGCTCTCAGGCCAGGAGTGGTCATCGGTGTTATCAGTCAACAGCTTTACTGAAACCCTCGTCTTGAGTCTGTTCGCCATTCAGGTTCTATCTTCAGCTCTGTGTCGCTACGTGGCCGTGGCTGCGTGCAAAATGCATGCTGTGCGCCGCAGCTTCCTCATTCCCATGATCTTCACATCTCCAGCCACATTGGGCGCCTTTGTGCTGGCTGTTTGGATTCCCTTTTTGAACATCAAACAAGAGAACAAAACCATATTTGCTGACTACTGTGATACCTTTGTGATCACGGAAAGCCCAGGGCTTGGCGTCGTGAGACTGATGCTGAGTGATTTAACTCGTGACCTGTGTCAACACATGCCAGACAAGGAGTCTTCGATGGGTTTTGGTCTTCTTGGATCATCTTTGGTGAGCTGGTGGATTGGCCTGGTGCTCTCCACACTCTACATCTGGTTCCTGAACACGGAACGTATTGCCAGGACAAAGGACTTGTTTGTGCGCAACCTTTATGAAGCAGCGTTCATTGACCAGTCCATGCTCTTGAACTCCAGGTTCGAGATTGTGCTCCAGCCAAGACATAACAGGGAAAAGGAGAAGGTGACCATCTACCTCTGTGCAACCATGTGGCATGAGACTGCAGATGAAATGATGAAGATGATCATATCGATGTTCAGGCTGGACAAGTTCCGACCAAAGAAAAACCAATTTAACGATGTTGTTTTTGAGTCTCACATTTATTTCGATGATGCTTTCCTGACCAAAGACAACCAGCGGTGTGTCAATGAGTATGCTGAGACCCTGGTGGAAGTCATCCGACAGGTTTATATCATATTCACAGAGGATTGTAAAAGTGTATTTAGGGAGAGAAAGCCTCTTCCTCACCAGAAAATCTTCCAAACGCCATACGGCTGCCGTCTGCAGTACACACTTCCTCACGGCAACACACTGTTTGTTCACTTCAAGGACAAACTCCAGATCCGCCACAAAAAGAGATGGTCTCAGATCATGTACATGTACTACCTTCTTGGCTGGAGGCTGCACAAGAAATACTATCAGATGTACAGGGAAGGGGATGATCAGCTGACAAATATTGAAGACCAGTTAAGAAAAGCCAAAAAGACCACATATATTCTGGCTCTAGATGGAGACACAGATTTCCAGCCTTCAGCAGTCATGCTTTTAGTGGATCGGCTCAGGTTGTACCCCGAAGTGGGAGCTGCTTGTGGCAGGATCCATCCTACTGGCACAGgccCGATGGTATGGTATCAGAAATTTGAGTATGCTGTGGGTCACTGGCTCCAGAAGACAGCTGAGCATGTGTTCGGATCTGTGTTGTGCAGCCCGGGCTGTTTCAGCCTGATGCGTGCAGAGGCACTCATGAGTGACAACGTCATGAAGAGATATACAAGAAAAGCAACTGAGGCTTCCCACTATCTACAATATGACCAGGGTGAGGACCGCTGGCTGTGCACACTGCTCCTGCAGCAGGGATGGCGAGTGGAGTACAGTGCTGCCTCTGACTCATACACCAATGCTCCACAGGAGTTCAAGGAGTTTTACAACCAACGGCGGCGCTGGGGCCCTTCCACAATGGCCAACACTCTGGACCTTCTTTCCAGTGGCAGTGTCACTGCACGAATGAACAAGTCCATATCACGACCTTACATTATCTACCAGACTATCACCATGGCTGCCTCGATCTTGGGCCCAGCTACAGTCTGCCTCATGATTGCAGGATGCTTTACATTCATCCTCAAGATAGATGCCAATGTTGCTCTTCTGATGGCGGTTATTCCTCCTGCAATCTACATAATTCTCTGCTATTATCTTGGGCAAGCAAAATCAGACTTACAAATAAGAATTGCTGGCGTCATGAGCATATTCTATGCTTTTCTAACGACAGCAGCCATCTTATCTATTATAGGGGATATGGTACTGCAGCAGACTTTCGTGACCCCAAATGGCTTGTTCTTCATAGGCATAACCTCTGTGTACATTGCCACCGCCCTTCTTCATCCTCATGAGTTCCATCTTATCATCTTTGGCTTCCTTTATGTCATCTGCATCCCCAGTGGCTACCTGCTGCTGGCAATTTATTCCATGGTCAACATGAACAATGTGTCATGGGGCACACGCGAATCTGCCAACCAGACCACTGGATCTGAGGGGAACCTTCAGCAAAATGTCAAGTGCCAGAAGCTGTTCAAAATATGTGGCTACAATCTGGAGGTTCAACTGAACGAAGACAAAAAAGTGATGTGTGCAGTGCCAGAGAGCGAACCTCTTTTGAAAGTCGAAACCAAAGTGCCATCCGAACCTATAGAAAGaccTTTCATTGAGAACTTTTTTATTCAACAGTTGGCAGAAAGCTCTGGTGAACTGGCCCTTATGGAGCACAGCTTTAATTTGgaagaagaaaagttttGGAAGGACCTAATTGAACAATACCTAAAGCCATTAAAgactgataaaaaaaaggaagaaaaagtcaAAGCAGATCTGAAAGACCTACGCAACAAGGcaacttttgtgttttttatctgTAATGCCCTGTGGCTTGTGGCTACTTTCTTTTTGCAAGCCATTGGCACTATAATCAAAATCCCCATCCCAACGACTTATACCAATGGAACAATTGACCATAACAGGACGCTTTATATCGATCCTATTGGACTGATGTTCCTCATCAGTTTTGCAGGCCTCCTTATTATCCAGTTTGCAGCTATGGTGTGGCACAgagtCCAAACTTTAATCCATTTCACTGCTTACACTGGGACTGAGGCCATGGTTAACAGGAAGGTGATGATAAACTCTCTGGAACCGATCACTGAAGAAAAcaATTTTCTTTAGGTGGatattaaattgattaaaagCCTACAAGTGGATGATCTAAAAGATGAACTGTGATGGGAAACTTTGCAACAACACAAACCTGGCAAACCTAAGCCTCCTTAGGCTATACAATATCTGCTTATTGGGATTGAAAGAATTAgtgttttttaaacactgtttacaATTATTTGTTACTTCTCCTTTCACTGTAgtaactgttattattattattattattattattattattattattattattagggggccaagcac

Function

GO: NA

KEGG:

id description
K00698 CHS1; chitin synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301039.1 True 3909 mRNA 0.45 20 8329665 8350126

Neighbor

gene id symbol gene type direction distance location
LOC113544354 LOC108260789,LOC108260790 coding upstream 28654 8289291 ~ 8301011 (+)
ddx21 ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728 coding upstream 50205 8263979 ~ 8279460 (+)
si:ch1073-291c23.2 LOC108260910 coding upstream 76998 8240639 ~ 8252667 (+)
vit vit coding upstream 92173 8207670 ~ 8237492 (+)
cilk1 ick,LOC108261001,LOC108256381 coding upstream 160677 8154051 ~ 8168988 (+)
chs1 chs2 coding downstream 28288 8378414 ~ 8389447 (+)
LOC113544399 sult6b1 coding downstream 50668 8400794 ~ 8410541 (+)
slc30a6 slc30a6 coding downstream 64347 8414473 ~ 8437196 (+)
LOC113544248 LOC108260666 coding downstream 124758 8474884 ~ 8486535 (+)
LOC113544387 sptbn1,LOC108260989,LOC108414519,LOC105890945 coding downstream 145950 8496076 ~ 8583090 (+)
G394262 NA non-coding upstream 44326 8285006 ~ 8285339 (+)
G394260 NA non-coding upstream 49461 8279534 ~ 8280204 (+)
G394229 NA non-coding upstream 94505 8234679 ~ 8235160 (+)
G394156 NA non-coding upstream 175887 8152460 ~ 8153778 (+)
G394155 LOC108413271 non-coding upstream 177277 8151403 ~ 8152388 (+)
G394291 NA non-coding downstream 70556 8420682 ~ 8440437 (+)
G394306 NA non-coding downstream 116143 8466269 ~ 8466602 (+)
G394373 NA non-coding downstream 310570 8660696 ~ 8661230 (+)
G394520 NA non-coding downstream 502418 8852544 ~ 8852767 (+)
G394527 NA non-coding downstream 562754 8912880 ~ 8913084 (+)
G394251 NA other upstream 70363 8258928 ~ 8259302 (+)
G393467 slit1 other upstream 898755 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1428725 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1710983 6614859 ~ 6618682 (+)
lrba lrba other upstream 2090587 6039414 ~ 6239078 (+)
LOC113544250 NA other downstream 785831 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1597615 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1750811 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1849197 10199323 ~ 10239199 (+)
G395242 NA other downstream 2156464 10506590 ~ 10516369 (+)

Expression


Co-expression Network