ddx21 (ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728)


Basic Information

Item Value
gene id ddx21
gene name ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8263979 ~ 8279460 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301136.1
GTGTGACGCTAACGGTCCTTTTCCTGCCTGTTCCCGTGGCAGTGGCTGTGTTCATCTGCGGGAGAAACGGTACACAATGCCATCATTAGTTTTAACCAGCAGTGACAACGTTATCACCATGAACGACGTGGACGAGGGATTAGACAGCAATTTGGAGACCAAAaaaaagaaagacaaggtcaagaagaagaaaacgACTGTGACAGAAGAGTCTGCTGACTGCGATCCACCGGCTCCCAAAAAGGTAAAACGAGAAAAGATGGACACAGCCAACGGGACCGTGCAGACATCTCCCGACGTCAATGGAAACGTCGGGAGGAAACCAGTTAAAGTTAAGAACCCGGCAGGCGAGCAGTCAGAGaagaagaagaaaaagaaggcaGCTACATCAGATGACACAACAATCGACCAAGCACCATCTGTCAATGGCGTTAGTACAAACTCACCAAAGACTCAAGTGAAAGTCAATGGGCATGTCACAGACTCGACGCAGTCCAGTGAAGACTCCAACAGTGAGAGTGAAAAGGATGTGGAGACACCAGAGCAAAGAGAGGGCGCCTTCTCTAATTTCAGAATCTCACAGGACACCATCAAGCTACTCCAAGCACGGGGTGTGACGTATCTGTTTGATATTCAAGTGAAGACCTTCAACTCTGTGTATGATGGGAAGGACGTGATCGGCCAAGCCCGAACCGGCACTGGAAAGACTTTCTCTTTTGCAGTCCCACTAGTAGAGAAACTACAATCAGGAGCTGAGGACAAAAGAAGAGGGAGAGCTCCGAAAGTGCTGGTTCTCGCTCCTACTCGAGAGCTGGCAATTCAGGTGGCTAAAGACTTCAAGGATATCACCAGGAAGCTCTCTGTTCACTGCTTCTATGGAGGAAGCTCCTACAACCCTCAAGTGGATGCCATTCGCAGCGGCATCGATGTTCTTGTTGGCACCCCAGGCCGAATAAAAGACCACCTTCAGAACAACAAACTGGATCTGTCCCAGCTGAAACATGTGGTGCTGGATGAAGTGGACCAAATGCTTGATATGGGCTTTGCTGAACAAGTGGAGGAGATCCTCTCTGCTTCCTACAAAAAAGGTGATGAAAGCAACCCTCAGACTCTCCTCTTTTCTGCCACTTGTCCTCCTTGGGTTTATGACGTGGCTAAGAAGTACATGCGCTCCCAGTATGTTCACGTGGACCTCATAGGCAAAAAATCTCAGAAAGCAGCCACTACAGTTGAGcATCTGGCCATAGCATGCCACTGGTCTCAGAGGGCAGCAGTGATTGGTGATGTAGTGCAGGTGTATAGCGGCAGCCACGGACGCACCATCGTCTTCTGTGAGACCAAGAAGGAAGCACATGAGCTGTCCATGAACACATCCATCAAACAGAGTGCACAGTCTTTGCATGGAGACATTCCTCAGAAACAACGAGAGCTCACCCTGAAGGGCTTCAGGAACGGCAATTTCGAGGTCCTGGTGGCTACCAATGTGGCTGCACGAGGCCTCGATATCCCAGAAGTTGATTTGGTTGTACAGTGTTCTCCTCCAAAGGACGTTGAGTCATATATTCACCGTTCTGGGCGAACTGGCAGAGCGGGAAGAACTGGCATCTGCATCTGTTTCTATCAGCGCAAAGAAGAAGACCAACTGCGATATGTGGAGCAGAAGGCTGGCATTACTTTCAAGCGTGTTGGCGTCCCAACTGCTAATGACATCGTCAAATCCTCCAGTAAAGATGCAGTCAGGTTCCTGGATTCTGTACCTCCAGCAGCTGTAGAACATTTCCGTGCAGCGGCCGAGAGGCTAATCGAAGAGCGAGGTGCAGTGGAGGCGCTAGCCGCTGCTCTTGCACACATATCAGGAGCCACGAGTCTGGAGCAGAGATCGCTCCTCAACTCAGATGCTGGTTATACCACGTTAGTGCTCAACTGCTCTCAAGAGATGCATAACATCGGCTACGCCTGGCGAGGGCTGAAAGAGCAGCTCGGGGAGGAGATAGACGACCAGATCAAACGAATGACCTTCCTTAAGAGTAAAAAGGGAGTTTGCTTTGACGTCCCAGCCGATAAAGTGAAAGAAATCCAGGACAAATGGCAGGATGGCCGCAGGTGGCAGCTGACCATCGCCACTGAACTTCCCGAATTGGAGGAAAGCATGCGGAACCGTGGAGAAAGAGGGTCTGGTGCAAGGGCCAGAGGTCATGGTGGATTCCGCAGTGGCTTCCGCAATGGCTTCCGTGGTGGCAACAACCGAGGTGCAGGaagaggaggtggaggaagaggtggaagaagagatggaggaagaggtgGTGCTCAAAAGAGGAGCTTCAGCCAGGCCTTTGACTATTAAACAGCATACATTTGCTCTTGAGTGACTTTCTTTTCCAGCATTGATGGCTGGGtctgtcagttttttttccacttgtatTTGGGGAATCAGCCATTGCACTTCACCGGAAAACTGCTTTCCCAAACCTTTCATAGACAAAACAAGATAATTGCATTGCaattgtgtatttaaacagCTCTATTTAAGCCCATTCACATGAATGTGAATTTCATTAAAGTTGTCTTAATACACATAAA
>XM_034301137.1
GTGTGACGCTAACGGTCCTTTTCCTGCCTGTTCCCGTGGCAGTGGCTGTGTTCATCTGCGGGAGAAACGGTACACAATGCCATCATTAGTTTTAACCAGCAGTGACAACGTTATCACCATGAACGACGTGGACGAGGGATTAGACAGCAATTTGGAGACCAAAaaaaagaaagacaaggtcaagaagaagaaaacgACTGTGACAGAAGAGTCTGCTGACTGCGATCCACCGGCTCCCAAAAAGGTAAAACGAGAAAAGATGGACACAGCCAACGGGACCGTGCAGACATCTCCCGACGTCAATGGAAACGTCGGGAGGAAACCAGTTAAAGTTAAGAACCCGGCAGGCGAGCAGTCAGAGaagaagaaaaagaaggcaGCTACATCAGATGACACAACAATCGACCAAGCACCATCTGTCAATGGCGTTAGTACAAACTCACCAAAGACTCAAGTGAAAGTCAATGGGCATGTCACAGACTCGACGCAGTCCAGTGAAGACTCCAACAGTGAGAGTGAAAAGGATGTGGAGACACCAGAGCAAAGAGAGGGCGCCTTCTCTAATTTCAGAATCTCACAGGACACCATCAAGCTACTCCAAGCACGGGGTGTGACGTATCTGTTTGATATTCAAGTGAAGACCTTCAACTCTGTGTATGATGGGAAGGACGTGATCGGCCAAGCCCGAACCGGCACTGGAAAGACTTTCTCTTTTGCAGTCCCACTAGTAGAGAAACTACAATCAGGAGCTGAGGACAAAAGAAGAGGGAGAGCTCCGAAAGTGCTGGTTCTCGCTCCTACTCGAGAGCTGGCAATTCAGGTGGCTAAAGACTTCAAGGATATCACCAGGAAGCTCTCTGTTCACTGCTTCTATGGAGGAAGCTCCTACAACCCTCAAGTGGATGCCATTCGCAGCGGCATCGATGTTCTTGTTGGCACCCCAGGCCGAATAAAAGACCACCTTCAGAACAACAAACTGGATCTGTCCCAGCTGAAACATGTGGTGCTGGATGAAGTGGACCAAATGCTTGATATGGGCTTTGCTGAACAAGTGGAGGAGATCCTCTCTGCTTCCTACAAAAAAGGTGATGAAAGCAACCCTCAGACTCTCCTCTTTTCTGCCACTTGTCCTCCTTGGGTTTATGACGTGGCTAAGAAGTACATGCGCTCCCAGTATGTTCACGTGGACCTCATAGGCAAAAAATCTCAGAAAGCAGCCACTACAGTTGAGcATCTGGCCATAGCATGCCACTGGTCTCAGAGGGCAGCAGTGATTGGTGATGTAGTGCAGGTGTATAGCGGCAGCCACGGACGCACCATCGTCTTCTGTGAGACCAAGAAGGAAGCACATGAGCTGTCCATGAACACATCCATCAAACAGAGTGCACAGTCTTTGCATGGAGACATTCCTCAGAAACAACGAGAGCTCACCCTGAAGGGCTTCAGGAACGGCAATTTCGAGGTCCTGGTGGCTACCAATGTGGCTGCACGAGGCCTCGATATCCCAGAAGTTGATTTGGTTGTACAGTGTTCTCCTCCAAAGGACGTTGAGTCATATATTCACCGTTCTGGGCGAACTGGCAGAGCGGGAAGAACTGGCATCTGCATCTGTTTCTATCAGCGCAAAGAAGAAGACCAACTGCGATATGTGGAGCAGAAGGCTGGCATTACTTTCAAGCGTGTTGGCGTCCCAACTGCTAATGACATCGTCAAATCCTCCAGTAAAGATGCAGTCAGGTTCCTGGATTCTGTACCTCCAGCAGCTGTAGAACATTTCCGTGCAGCGGCCGAGAGGCTAATCGAAGAGCGAGGTGCAGTGGAGGCGCTAGCCGCTGCTCTTGCACACATATCAGGAGCCACGAGTCTGGAGCAGAGATCGCTCCTCAACTCAGATGCTGGTTATACCACGTTAGTGCTCAACTGCTCTCAAGAGATGCATAACATCGGCTACGCCTGGCGAGGGCTGAAAGAGCAGCTCGGGGAGGAGATAGACGACCAGATCAAACGAATGACCTTCCTTAAGAGTAAAAAGGGAGTTTGCTTTGACGTCCCAGCCGATAAAGTGAAAGAAATCCAGGACAAATGGCAGGATGGCCGCAGGTGGCAGCTGACCATCGCCACTGAACTTCCCGAATTGGAGGAAAGCATGCGGAACCGTGGAGAAAGAGGGTCTGGTGCAAGGGCCAGAGGTCATGGTGGATTCCGCAGTGGCTTCCGCAATGGCTTCCGTGGTGGCAACAACCGAGGTGCAGGaagaggaggtggaggaagaggtggaagaagagatggaggaagaggtgGTGCTCAAAAGAGGAGCTTCAGCCAGGCCTTTGACTATTAAACAGCATACATTTGCTCTTGAGTGACTTTCTTTTCCAGCATTGATGGCTGGGtctgtcagttttttttccacttgtatTTGGGGAATCAGCCATTGCACTTCACCGGAAAACTGCTTTCCCAAACCTTTCATAGACAAAACAAGATAATTGCATTGCaattgtgtatttaaacagCTCTATTTAAGCCCATTCACATGAATGTGAATTTCATTAAAGTTGTCTTAATACACATAAA
>XM_034301138.1
GGTCCTTTTCCTGCCTGTTCCCGTGGCAGTGGCTGTGTTCATCTGCGGGAGAAACGGTACACAATGCCATCATTAGTTTTAACCAGCAGTGACAACGTTATCACCATGAACGACGTGGACGAGGGATTAGACAGCAATTTGGAGACCAAAGTAAaaaaagaaagacaaggtcaagaagaagaaaacgACTGTGACAGAAGAGTCTGCTGACTGCGATCCACCGGCTCCCAAAAAGGTAAAACGAGAAAAGATGGACACAGCCAACGGGACCGTGCAGACATCTCCCGACGTCAATGGAAACGTCGGGAGGAAACCAGTTAAAGTTAAGAACCCGGCAGGCGAGCAGTCAGAGaagaagaagaaaaagaaggcaGCTACATCAGATGACACAACAATCGACCAAGCACCATCTGTCAATGGCGTTAGTACAAACTCACCAAAGACTCAAGTGAAAGTCAATGGGCATGTCACAGACTCGACGCAGTCCAGTGAAGACTCCAACAGTGAGAGTGAAAAGGATGTGGAGACACCAGAGCAAAGAGAGGGCGCCTTCTCTAATTTCAGAATCTCACAGGACACCATCAAGCTACTCCAAGCACGGGGTGTGACGTATCTGTTTGATATTCAAGTGAAGACCTTCAACTCTGTGTATGATGGGAAGGACGTGATCGGCCAAGCCCGAACCGGCACTGGAAAGACTTTCTCTTTTGCAGTCCCACTAGTAGAGAAACTACAATCAGGAGCTGAGGACAAAAGAAGAGGGAGAGCTCCGAAAGTGCTGGTTCTCGCTCCTACTCGAGAGCTGGCAATTCAGGTGGCTAAAGACTTCAAGGATATCACCAGGAAGCTCTCTGTTCACTGCTTCTATGGAGGAAGCTCCTACAACCCTCAAGTGGATGCCATTCGCAGCGGCATCGATGTTCTTGTTGGCACCCCAGGCCGAATAAAAGACCACCTTCAGAACAACAAACTGGATCTGTCCCAGCTGAAACATGTGGTGCTGGATGAAGTGGACCAAATGCTTGATATGGGCTTTGCTGAACAAGTGGAGGAGATCCTCTCTGCTTCCTACAAAAAAGGTGATGAAAGCAACCCTCAGACTCTCCTCTTTTCTGCCACTTGTCCTCCTTGGGTTTATGACGTGGCTAAGAAGTACATGCGCTCCCAGTATGTTCACGTGGACCTCATAGGCAAAAAATCTCAGAAAGCAGCCACTACAGTTGAGcATCTGGCCATAGCATGCCACTGGTCTCAGAGGGCAGCAGTGATTGGTGATGTAGTGCAGGTGTATAGCGGCAGCCACGGACGCACCATCGTCTTCTGTGAGACCAAGAAGGAAGCACATGAGCTGTCCATGAACACATCCATCAAACAGAGTGCACAGTCTTTGCATGGAGACATTCCTCAGAAACAACGAGAGCTCACCCTGAAGGGCTTCAGGAACGGCAATTTCGAGGTCCTGGTGGCTACCAATGTGGCTGCACGAGGCCTCGATATCCCAGAAGTTGATTTGGTTGTACAGTGTTCTCCTCCAAAGGACGTTGAGTCATATATTCACCGTTCTGGGCGAACTGGCAGAGCGGGAAGAACTGGCATCTGCATCTGTTTCTATCAGCGCAAAGAAGAAGACCAACTGCGATATGTGGAGCAGAAGGCTGGCATTACTTTCAAGCGTGTTGGCGTCCCAACTGCTAATGACATCGTCAAATCCTCCAGTAAAGATGCAGTCAGGTTCCTGGATTCTGTACCTCCAGCAGCTGTAGAACATTTCCGTGCAGCGGCCGAGAGGCTAATCGAAGAGCGAGGTGCAGTGGAGGCGCTAGCCGCTGCTCTTGCACACATATCAGGAGCCACGAGTCTGGAGCAGAGATCGCTCCTCAACTCAGATGCTGGTTATACCACGTTAGTGCTCAACTGCTCTCAAGAGATGCATAACATCGGCTACGCCTGGCGAGGGCTGAAAGAGCAGCTCGGGGAGGAGATAGACGACCAGATCAAACGAATGACCTTCCTTAAGAGTAAAAAGGGAGTTTGCTTTGACGTCCCAGCCGATAAAGTGAAAGAAATCCAGGACAAATGGCAGGATGGCCGCAGGTGGCAGCTGACCATCGCCACTGAACTTCCCGAATTGGAGGAAAGCATGCGGAACCGTGGAGAAAGAGGGTCTGGTGCAAGGGCCAGAGGTCATGGTGGATTCCGCAGTGGCTTCCGCAATGGCTTCCGTGGTGGCAACAACCGAGGTGCAGGaagaggaggtggaggaagaggtggaagaagagatggaggaagaggtgGTGCTCAAAAGAGGAGCTTCAGCCAGGCCTTTGACTATTAAACAGCATACATTTGCTCTTGAGTGACTTTCTTTTCCAGCATTGATGGCTGGGtctgtcagttttttttccacttgtatTTGGGGAATCAGCCATTGCACTTCACCGGAAAACTGCTTTCCCAAACCTTTCATAGACAAAACAAGATAATTGCATTGCaattgtgtatttaaacagCTCTATTTAAGCCCATTCACATGAATGTGAATTTCATTAAAGTTGTCTTAATACACATAAA

Function

symbol description
ddx21 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; musculature system; nervous system; and segmental plate. Orthologous to several human genes including DDX21 (DExD-box helicase 21).

NR:

description
PREDICTED: nucleolar RNA helicase 2-like

GO: NA

KEGG:

id description
K16911 DDX21; ATP-dependent RNA helicase DDX21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301136.1 True 2580 mRNA 0.49 16 8263979 8279460
XM_034301137.1 False 2577 mRNA 0.49 16 8263979 8279460
XM_034301138.1 False 2571 mRNA 0.49 16 8263992 8279460

Neighbor

gene id symbol gene type direction distance location
si:ch1073-291c23.2 LOC108260910 coding upstream 11312 8240639 ~ 8252667 (+)
vit vit coding upstream 26487 8207670 ~ 8237492 (+)
cilk1 ick,LOC108261001,LOC108256381 coding upstream 94991 8154051 ~ 8168988 (+)
LOC113544397 mark1,LOC108260538,LOC108414040 coding upstream 138541 8067433 ~ 8125438 (+)
efemp1 efemp1,LOC108437849 coding upstream 212759 8017212 ~ 8051220 (+)
LOC113544354 LOC108260789,LOC108260790 coding downstream 9831 8289291 ~ 8301011 (+)
LOC113544353 LOC108260790,LOC108260789 coding downstream 50205 8329665 ~ 8350126 (+)
chs1 chs2 coding downstream 98954 8378414 ~ 8389447 (+)
LOC113544399 sult6b1 coding downstream 121334 8400794 ~ 8410541 (+)
slc30a6 slc30a6 coding downstream 135013 8414473 ~ 8437196 (+)
G394229 NA non-coding upstream 28819 8234679 ~ 8235160 (+)
G394156 NA non-coding upstream 110201 8152460 ~ 8153778 (+)
G394155 LOC108413271 non-coding upstream 111591 8151403 ~ 8152388 (+)
G394153 NA non-coding upstream 114947 8148554 ~ 8149032 (+)
G394150 NA non-coding upstream 117862 8145443 ~ 8146117 (+)
G394260 NA non-coding downstream 74 8279534 ~ 8280204 (+)
G394262 NA non-coding downstream 5546 8285006 ~ 8285339 (+)
G394291 NA non-coding downstream 141222 8420682 ~ 8440437 (+)
G394306 NA non-coding downstream 186809 8466269 ~ 8466602 (+)
G394373 NA non-coding downstream 381236 8660696 ~ 8661230 (+)
G394251 NA other upstream 4677 8258928 ~ 8259302 (+)
G393467 slit1 other upstream 833069 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1363039 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1645297 6614859 ~ 6618682 (+)
lrba lrba other upstream 2024901 6039414 ~ 6239078 (+)
LOC113544250 NA other downstream 856497 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1668281 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1821477 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1919863 10199323 ~ 10239199 (+)
G395242 NA other downstream 2227130 10506590 ~ 10516369 (+)

Expression


Co-expression Network