LOC117596358 (LOC108260518)


Basic Information

Item Value
gene id LOC117596358
gene name LOC108260518
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 4072 ~ 5956 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301227.1
GTTTACTGTGTCTGCGGCTGGAGACGAGGCGGTCAAACTGCAGGAAGTGGAAGGAACCACTATAACTCTCCATACTGGAATAACTGGAATTCAGAGTGATGCTCAGATTCTGTGGTCTTATGGACCTGAGAAAGCAGAGGAAAAGATATTGAACAGTCAGGTTGAGAGATTTAAAGAGCAACTGCAGCTGGACAGAACCAGTGGAGCTTTAACCATCAGGAACATCAGCACAAATGATTCtggagtttatttattacaagtcATCACTGGACGTCTCACATCCAAGactttcagtgtcagtgtttatgCTCCAGTATCAACTCCAGTAATAAGAAATCAAAGAGGAAAACGAAGTGTGTCTTCCACAGAGCAGTGTTTCCTCCTGTGCACTGTGGAGAATGGAGAAGATGTGAAGTTATCCTGGTACAGAGGGAATGAGAGAATCTCCATCACCAATAACACAGATCTCAGTGTTCCCCTCAATCTCCCACTTCAAATACAACTCCATGatattaacactaacacttatACCTGTGTGTCTGCAAACCCTGTCAGCAGTAAAACAGCTTCTCTCAACATCGCACAGCTCTGTGATCATAACTCAGGACAAACTAGTGGTTCCCATTCACTGCTTCCTGTCCTGATATCTGTTGGAGTTTTGTGTTCATAa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301227.1 True 670 mRNA 0.43 4 4072 5956

Neighbor

gene id symbol gene type direction distance location
LOC117596365 LOC108260518 coding downstream 20712 26668 ~ 30550 (+)
ccdc86 ccdc86,si:ch211-217k17.7,LOC107570826,LOC107675318,LOC107571916,LOC107746093 coding downstream 54992 60948 ~ 67902 (+)
si:ch211-217k17.11 NA coding downstream 63494 69450 ~ 74454 (+)
LOC117596367 NA coding downstream 106235 112191 ~ 114613 (+)
LOC113524531 LOC108260598 coding downstream 119160 125116 ~ 180742 (+)
G389450 glb1 non-coding downstream 41616 47572 ~ 49620 (+)
G389490 LOC108260594,LOC108260595,LOC108260596 non-coding downstream 332917 338873 ~ 346593 (+)
G389492 NA non-coding downstream 333644 339600 ~ 375948 (+)
G389442 NA non-coding downstream 346851 352807 ~ 374670 (+)
G389498 NA non-coding downstream 397748 403704 ~ 404420 (+)
G389456 LOC108260598 other downstream 93258 99214 ~ 181013 (+)
smu1b LOC108260605,LOC108431794,LOC107720315,LOC107692159,LOC107746727,LOC107551820 other downstream 285023 290979 ~ 328491 (+)
LOC113524533 NA other downstream 327183 333139 ~ 348335 (+)
LOC117596315 NA other downstream 342440 348396 ~ 350005 (+)
G389438 LOC108260589,LOC108260518,LOC108260515 other downstream 396046 402002 ~ 950407 (+)

Expression


Co-expression Network