ncapg (ncapg)


Basic Information

Item Value
gene id ncapg
gene name ncapg
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6346748 ~ 6357763 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301274.1
CGTCCAGGAAACGCGCTAGATGTGAAATACCGCGAGAATTGAATTTGAAAACTGGCGGTTGAATACTGACCCATTTTCGGAAGAGGAGAAGCCGCTTAAAgagcGTCAACATGACTGCTGATTCTGAACTGGAGATCCGTGAAACCTTCCAGCGCGCTCAAAAAGCGCACAACAACAAGGCCAAGCTGGTGGCCAGTCTGAAGAACATGTATGTTAAGtCAGAGGATAAGGCAGAGTTCCACGAGGAGTTTCTGCGCTGCCTAAAATACGCGCTGATCGTCTACACCAGAGAGCCGGCGGTGGAAAGTGTCATCGACTTCGTGGTGAAGTTTGCCGCCAGCTTCGAGACTCCCatcagagaggaggaggaggaggaagaggatgaggaagaggaggaggatacATTTCTGAGTTTCCTGTTCAACTTTCTGTTGGAGTGTCACGGCGTGAGCAGCCACGCGGTGCGGTTCCGGGTGTGTCAGCTGGTGAACAAGCTCCTGGGCAGCCTGAGTGAGAACGCGCAGATCGACGATGGGCTGTGTGAACGGATCCATGAGGCCATGTTGATCCGCGTCACAGATAAATACCCCAATGTCAGGATACAGGCCGCGCTCGCCATGGCCCGCCTGCAGGACCCCGAGAACCCTGATTGTCCCACGGTTAAAGcctACATGCTGCTTTTGGAGAATGACTCAAACCCTGAGGTGCGGAGAGCCGTCCTGTCCTGCATCGCACCTTCTGCCCTCACACTCCCCAAAATCTACAGACGTACTCGAGATGTTAAAGAGAAAGTCCGCAAACTGGCCTttcaggTGCTTGCTGAGAAAGTGCATATCCGAGCTTTGACCATCGCTCAGAGAGTCAGCCTGCTGCAGCAAGGTCTCAATGACTCTGCAGactcCGTGAAGGAGGTGGTGAAGCAGATGCTCCTTCCCTCTTGGCTCCGCCTCCTTCAGGGAGACGTGCTGCAGTTACTACACAGACTGGATGTCGAGAACTGCTCCGACACCGCAGTGGCTGCCCTGCACGCCCATTTCTCTATGGCAACGACCCCCGATGACCTTCTGAATGCAGCTAAACTGGACGACAGaaagctGATCCCATTAGACGCCCTGACGTGTGAGAATGTGCTCTACTGGCGTGCACTGTGCGAGTTTGTGAAGAGTAAAGGTGATGAGGGGGAGGAGATTCTAGAAAAACTCTTACCCGAACCTGCTCTGTTCGCCGAGTACCtgtacagTTATATGAAGACCCTTCCAGCCATGTGTGAAGATGACAGAGCTGATCTGACTCAGCTGGAGTCTGTGATGATGAAGGAGTTCATCACACAGCAGCTCATCCAGCTAGTGGACTGCTTGGACACTGCAGAGGAGGGAGGAAGAAAACGTGTGCTCGCAGTCCTGAAGGAGATGCTGGTGCTGCCGAACACACCGCTCTCTCTGATCAGTCAGCTGGTGGAGAGACTGATGAGAATTATCCACGATGATCAGCAGCGCATCGCaacgGTAGCTGAAATCATCTCCGACGTGAGGGAGCCGATCGTGCCCGTCACGCAAACTGAGGACGAGAACGAGAAACGCAAAAGACAAGTCAGActGGCAGAGGTGAAGGTGTGTATAATGGAGTGTAAGCAACAGCTGGAAGAGTGTATCAGCGTTCAAGATTTCAGTCGCGCTGCTGAGTTGAAGAGCTCCATCACTGAGCTGGAGGAGCTGAAGAACCAATTAGCACAGGAGAACATGGACACTGAACCTGCTAAAGAGCAGCACGCAgagaagttcTTGGTTTCAGGTCTAGAACTCTCCAATATTTCATCTCTAAGCTTTATCAAGaaTGATCCGGAGACCTTGCTGAAGTGTCTGACGATGTGTGGTGAAGCGCTGAAACAGATGAATATCAACCGAGGAATCTGTCCGACCATCAACGGCCTCCTAGAGTCGCTGGTGTTGCCGTGTGTGTCAAACTCCAACGCCGCAGTGAGGAACATGGCTGTAGTGTGTTTGGGCACTGCGGCTCTCCACAGCAAAGACCTTGCCAAGACACACCTGGTGCTCCTGCTgcagATCACCCAGCTGGACGAGCCTAAGATCAGGATCAGCGCTCTCAGAGCTGTGGTCGATCAGTTGCTCTTGAACGGCCTAGACATCCTGCGCGATAGCCCCGCCTCCCAGCAAACACAAACCTCTGATTGGCCTGATGGCAGTGACGGACAAGCGGATCGTCCAGCTGAAGAGGAGGACAATCCTATACAGAGTATTCTGAAGCTGCTGGCTGAGTTCTTGGACAGCGAGATCTGCGAGCTGCGCACGGagacagtggagtgtgtgtgtaagctgctGTACTGTGGCAGGATAGTGAGCGTGAAGCTGCTCACTCGCCTCATTCTGCTCTGGTACAACCCACTGACTGAAGAGGACCAGAAACTGAGACACTGCATCGGAGTGTTCCTgcagctctacacacactcacacagGACTCATCAGGAGTGCGTAGAGGAGAGCTTCATTCCCACCATGCGGACGTTATTCAACGCGCCAGCCATGTCTCCGCTCTCCGAGATCGACACCAACAACGTTGCCGAGCTCTTCGTAGAGCTCACGCGCTCCAACGCTCAAACTCGGGATGCGAGTGTGCACAACTCCCTGGCCGTGCGAGTGTGTAACGAGATTCTGCGAGACACTTCTGCTCCCGAGGTGCGTCTGTACTGCAAAACCCTCGGCACTTTGGAGATCAGCACTGATCCGGGACCTGCTAACGACGAACTGCAGCAGCTCCTCACCTCCATCCTGCAGgaggtgaAGGATAAGCACTGCGTGAAAGCGTTAGAGAAAGTGCTTGCTCGTCTTAAAGGAGATCAGTGTGTTCGAGTTACACGCACTCAGGACGCAGTGCTGAACACTCTGGATGAAAACGCCAGTGAGCTTGTGAATGGAGATGATGGCAAATCTAAACGACCCAGAAGAGGTCAGAAGAAAGCCACGACAGCCCGGAGTGTAAAAAAACAGTCTAAAGCGAAGGAGTCTTCTGAGGAAAGcgatGAGGAGAATGTTCCAGAAGCCACAGAGGCTCCATCGGCACGGCCGAGTCGGCGCGCTAAAACGGCAGCTCTTGATAAAACCAGGCAGGACCTGACAGCGCTGATGAATCACGAAGCCAGTGTGTAGGTCAGGGTCAGTCTAAACATCTCCAAACACTCCCAAtctctccatgtgtgtgtcttatGTTTAGGAGACAACGTCTTTGATCGATATTTATGCAATGTTGAACCGCTGAGGTGATTTAACACCTAACACCAACAAGTGATGTTTAGTCTCTACACTTTAAAGCGTGCATATATGTTTAACATTAATGTATACATGAATAGCTCATCCATGAGTGATATTACCTCCATATGAGGCGTCATcactcatgaatattcatcacTTATTAATACAACTAACGTTATGATTCATTATGACATTGACATAGTCTGATAATAAGGCTTACTTGCTGTGCagtttaagatttttttcccaccaaaCTGCACTGCTGTACAATGTTCACTCTTCTCTATTATTAATCatcactgcagtgtgtaacgTCTCCTCTGTTCTTCACGATCAAGTTTtgacctttacacacacacacacacacacacacacacacacagagagagagagagagagagcactgttGAAGTGCTCGTTATAATATCAGCAAAACTCACTCGACCTGCAAACCCGAgcaaattattttgttttattctcaagtgttttatttttaaaccccAATAAACCATTTTCTGTTA
>XM_034301276.1
CGTCCAGGAAACGCGCTAGATGTGAAATACCGCGAGAATTGAATTTGAAAACTGGCGGTTGAATACTGACCCATTTTCGGAAGAGGAGAAGCCGCTTAAAgagcGTCAACATGACTGCTGATTCTGAACTGGAGATCCGTGAAACCTTCCAGCGCGCTCAAAAAGCGCACAACAACAAGGCCAAGCTGGTGGCCAGTCTGAAGAACATGTATGTTAAGtCAGAGGATAAGGCAGAGTTCCACGAGGAGTTTCTGCGCTGCCTAAAATACGCGCTGATCGTCTACACCAGAGAGCCGGCGGTGGAAAGTGTCATCGACTTCGTGGTGAAGTTTGCCGCCAGCTTCGAGACTCCCatcagagaggaggaggaggaggaagaggatgaggaagaggaggaggatacATTTCTGAGTTTCCTGTTCAACTTTCTGTTGGAGTGTCACGGCGTGAGCAGCCACGCGGTGCGGTTCCGGGTGTGTCAGCTGGTGAACAAGCTCCTGGGCAGCCTGAGTGAGAACGCGCAGATCGACGATGGGCTGTGTGAACGGATCCATGAGGCCATGTTGATCCGCGTCACAGATAAATACCCCAATGTCAGGATACAGGCCGCGCTCGCCATGGCCCGCCTGCAGGACCCCGAGAACCCTGATTGTCCCACGGTTAAAGcctACATGCTGCTTTTGGAGAATGACTCAAACCCTGAGGTGCGGAGAGCCGTCCTGTCCTGCATCGCACCTTCTGCCCTCACACTCCCCAAAATCTACAGACGTACTCGAGATGTTAAAGAGAAAGTCCGCAAACTGGCCTttcaggTGCTTGCTGAGAAAGTGCATATCCGAGCTTTGACCATCGCTCAGAGAGTCAGCCTGCTGCAGCAAGGTCTCAATGACTCTGCAGactcCGTGAAGGAGGTGGTGAAGCAGATGCTCCTTCCCTCTTGGCTCCGCCTCCTTCAGGGAGACGTGCTGCAGTTACTACACAGACTGGATGTCGAGAACTGCTCCGACACCGCAGTGGCTGCCCTGCACGCCCATTTCTCTATGGCAACGACCCCCGATGACCTTCTGAATGCAGCTAAACTGGACGACAGaaagctGATCCCATTAGACGCCCTGACGTGTGAGAATGTGCTCTACTGGCGTGCACTGTGCGAGTTTGTGAAGAGTAAAGGTGATGAGGGGGAGGAGATTCTAGAAAAACTCTTACCCGAACCTGCTCTGTTCGCCGAGTACCtgtacagTTATATGAAGACCCTTCCAGCCATGTGTGAAGATGACAGAGCTGATCTGACTCAGCTGGAGTCTGTGATGATGAAGGAGTTCATCACACAGCAGCTCATCCAGCTAGTGGACTGCTTGGACACTGCAGAGGAGGGAGGAAGAAAACGTGTGCTCGCAGTCCTGAAGGAGATGCTGGTGCTGCCGAACACACCGCTCTCTCTGATCAGTCAGCTGGTGGAGAGACTGATGAGAATTATCCACGATGATCAGCAGCGCATCGCaacgGTAGCTGAAATCATCTCCGACGTGAGGGAGCCGATCGTGCCCGTCACGCAAACTGAGGACGAGAACGAGAAACGCAAAAGACAAGTCAGActGGCAGAGGTGAAGGTGTGTATAATGGAGTGTAAGCAACAGCTGGAAGAGTGTATCAGCGTTCAAGATTTCAGTCGCGCTGCTGAGTTGAAGAGCTCCATCACTGAGCTGGAGGAGCTGAAGAACCAATTAGCACAGGAGAACATGGACACTGAACCTGCTAAAGAGCAGCACGCAgagaagaaTGATCCGGAGACCTTGCTGAAGTGTCTGACGATGTGTGGTGAAGCGCTGAAACAGATGAATATCAACCGAGGAATCTGTCCGACCATCAACGGCCTCCTAGAGTCGCTGGTGTTGCCGTGTGTGTCAAACTCCAACGCCGCAGTGAGGAACATGGCTGTAGTGTGTTTGGGCACTGCGGCTCTCCACAGCAAAGACCTTGCCAAGACACACCTGGTGCTCCTGCTgcagATCACCCAGCTGGACGAGCCTAAGATCAGGATCAGCGCTCTCAGAGCTGTGGTCGATCAGTTGCTCTTGAACGGCCTAGACATCCTGCGCGATAGCCCCGCCTCCCAGCAAACACAAACCTCTGATTGGCCTGATGGCAGTGACGGACAAGCGGATCGTCCAGCTGAAGAGGAGGACAATCCTATACAGAGTATTCTGAAGCTGCTGGCTGAGTTCTTGGACAGCGAGATCTGCGAGCTGCGCACGGagacagtggagtgtgtgtgtaagctgctGTACTGTGGCAGGATAGTGAGCGTGAAGCTGCTCACTCGCCTCATTCTGCTCTGGTACAACCCACTGACTGAAGAGGACCAGAAACTGAGACACTGCATCGGAGTGTTCCTgcagctctacacacactcacacagGACTCATCAGGAGTGCGTAGAGGAGAGCTTCATTCCCACCATGCGGACGTTATTCAACGCGCCAGCCATGTCTCCGCTCTCCGAGATCGACACCAACAACGTTGCCGAGCTCTTCGTAGAGCTCACGCGCTCCAACGCTCAAACTCGGGATGCGAGTGTGCACAACTCCCTGGCCGTGCGAGTGTGTAACGAGATTCTGCGAGACACTTCTGCTCCCGAGGTGCGTCTGTACTGCAAAACCCTCGGCACTTTGGAGATCAGCACTGATCCGGGACCTGCTAACGACGAACTGCAGCAGCTCCTCACCTCCATCCTGCAGgaggtgaAGGATAAGCACTGCGTGAAAGCGTTAGAGAAAGTGCTTGCTCGTCTTAAAGGAGATCAGTGTGTTCGAGTTACACGCACTCAGGACGCAGTGCTGAACACTCTGGATGAAAACGCCAGTGAGCTTGTGAATGGAGATGATGGCAAATCTAAACGACCCAGAAGAGGTCAGAAGAAAGCCACGACAGCCCGGAGTGTAAAAAAACAGTCTAAAGCGAAGGAGTCTTCTGAGGAAAGcgatGAGGAGAATGTTCCAGAAGCCACAGAGGCTCCATCGGCACGGCCGAGTCGGCGCGCTAAAACGGCAGCTCTTGATAAAACCAGGCAGGACCTGACAGCGCTGATGAATCACGAAGCCAGTGTGTAGGTCAGGGTCAGTCTAAACATCTCCAAACACTCCCAAtctctccatgtgtgtgtcttatGTTTAGGAGACAACGTCTTTGATCGATATTTATGCAATGTTGAACCGCTGAGGTGATTTAACACCTAACACCAACAAGTGATGTTTAGTCTCTACACTTTAAAGCGTGCATATATGTTTAACATTAATGTATACATGAATAGCTCATCCATGAGTGATATTACCTCCATATGAGGCGTCATcactcatgaatattcatcacTTATTAATACAACTAACGTTATGATTCATTATGACATTGACATAGTCTGATAATAAGGCTTACTTGCTGTGCagtttaagatttttttcccaccaaaCTGCACTGCTGTACAATGTTCACTCTTCTCTATTATTAATCatcactgcagtgtgtaacgTCTCCTCTGTTCTTCACGATCAAGTTTtgacctttacacacacacacacacacacacacacacacacagagagagagagagagagagcactgttGAAGTGCTCGTTATAATATCAGCAAAACTCACTCGACCTGCAAACCCGAgcaaattattttgttttattctcaagtgttttatttttaaaccccAATAAACCATTTTCTGTTA

Function

symbol description
ncapg Acts upstream of or within mitotic sister chromatid segregation. Located in condensed chromosome and cytoplasm. Is expressed in nervous system; optic cup; and pharyngeal arch 3-7 skeleton. Orthologous to human NCAPG (non-SMC condensin I complex subunit G).

NR:

description
PREDICTED: condensin complex subunit 3

GO:

id name namespace
GO:0007076 mitotic chromosome condensation biological_process
GO:0000796 condensin complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06678 YCG1, CAPG; condensin complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301274.1 True 3787 mRNA 0.51 23 6346748 6357763
XM_034301276.1 False 3733 mRNA 0.51 22 6346748 6357763

Neighbor

gene id symbol gene type direction distance location
sh3d19 NA coding upstream 320601 6009263 ~ 6026147 (+)
gatb gatb,LOC106602370 coding upstream 366853 5965484 ~ 5979895 (+)
tmem154 NA coding upstream 573495 5758941 ~ 5773253 (+)
si:cabz01076231.1 LOC108260839,LOC108436834,LOC107656773,LOC107574011,LOC107709299 coding upstream 735133 5606322 ~ 5611615 (+)
LOC113544404 LOC108260837,LOC108436836 coding upstream 753179 5589900 ~ 5593569 (+)
LOC113544357 slc24a2,LOC108260976,LOC106577456,LOC107377079 coding downstream 57531 6415294 ~ 6462526 (+)
heatr5b heatr5b coding downstream 153825 6511588 ~ 6542180 (+)
LOC113544279 strn,LOC108260865,LOC108429273 coding downstream 185347 6543110 ~ 6579929 (+)
LOC113544278 NA coding downstream 254388 6612151 ~ 6615645 (+)
si:dkeyp-74b6.2 cbln3,LOC108260982,LOC103033079,LOC103355776,LOC105919173 coding downstream 263141 6620904 ~ 6627134 (+)
G392610 mab21l2 non-coding upstream 133408 6169964 ~ 6213340 (+)
G392575 rps3a,LOC107695588 non-coding upstream 318411 6009022 ~ 6028337 (+)
G392578 NA non-coding upstream 377516 5966729 ~ 5969232 (+)
G392565 NA non-coding upstream 445581 5882883 ~ 5901167 (+)
G392562 NA non-coding upstream 487061 5856294 ~ 5859687 (+)
G392644 NA non-coding downstream 10564 6368327 ~ 6376260 (+)
G392679 NA non-coding downstream 120487 6478250 ~ 6480082 (+)
G392681 NA non-coding downstream 123186 6480949 ~ 6481497 (+)
G392682 LOC108261007,LOC103027614 non-coding downstream 124775 6482538 ~ 6483100 (+)
G393056 NA non-coding downstream 305991 6663754 ~ 6665049 (+)
lrba lrba other upstream 107670 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 436156 5831544 ~ 5910592 (+)
LOC113545745 ptprd other upstream 1489774 4463898 ~ 4856974 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other upstream 2945923 3359377 ~ 3400825 (+)
LOC113545784 clhc1 other upstream 3959881 2364554 ~ 2386867 (+)
LOC113544406 LOC108260665,LOC108260638 other downstream 257096 6614859 ~ 6618682 (+)
LOC117596330 NA other downstream 539230 6896993 ~ 6900940 (+)
G393467 slit1 other downstream 1069855 7427618 ~ 7430910 (+)
G394251 NA other downstream 1901165 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 2778194 9135957 ~ 9140298 (+)

Expression


Co-expression Network