bdh2 (bdh2,LOC107746975)


Basic Information

Item Value
gene id bdh2
gene name bdh2,LOC107746975
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 906881 ~ 916289 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301305.1
TCGTCTCTCCCGGAAGTTCTCGCAACATCTCGCGAGATTTGGCCGGTTAGTTCAGCTTGCAGTCACGTGATTTCCTCCTGCTCATTAAACCTCAGGAAAATTAAAGGAAAGAGCAGTAGCACTGACCGGGgagaattttaattaaattcaggtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagtcatggGCCGGCTGGACGGGAAGGTGATCGTGTTGTCTGCGGCGGCGCAGGGAATCGGCCGAGCCGCTGCTCTggCTTTTGCTAAAGAAGGAGCTCAGGTCATTGCGACGGACATCAACGGAGAGAAACTGAAAGAACTGGATGGAAGTGCAGGAATCAGGACGAAGGAGCTGGATGTGACGAAACAGGACCAAGTGGAAGCTCTGGCTAAAGAGCTGGAGCGAGTCGATGTGCTGTTTAACGTCGCGGGGTTTGTTCATCATGGTACGATCCTGGAGTGTGAGGAGTCGGACTGGGACTTTACCATGAACCTGAACGTACGCAGCATGTACCTGATGATCAGAGCTTTCCTGCCCAAGATGTTGGCTCGCAGGTCGGGGAACATCATTAACATGGCGTCTGTGGCCTCAAGTATCAAAGgtgtagtgaacaggtgtgtgtacagCACGTCTAAAGCAGCAGTCATCGGTCTCACCAAGTCTGTAGCTGCAGATTTCCTCGAGCAGGGGATTCGCTGTAACTGCATCTGCCCCGGAACTGTAGACACTCCGTCACTCAGAGACAGAATCCAGGCCAGACCTGATCCTGAACAGGCGTTTAAGGACTTCATGGCGAGGCAGAAGATCGGCAGGATGTGCACTGCAGAGGAAGTGGctcatctgtgtgtttatctcgcCTCCGATGAGTCGGGATACGTGACCGGAGCTGAACACATCATCGATGGAGGATGGAGTCTGTGATTATTTCACACTGTGATGGAGCTGCTGTGAAATTTACTACAttatgaagggaaaaaaaaaa
>XM_034301306.1
GCGTCGTCTCTCCCGGAAGTTCTCGCAACATCTCGCGAGATTTGGCCGGTTAGTTCAGCTTGCAGTCACGTGATTTCCTCCTGCTCATTAAACCTCAGGAAAATTAAAGgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagtcatggGCCGGCTGGACGGGAAGGTGATCGTGTTGTCTGCGGCGGCGCAGGGAATCGGCCGAGCCGCTGCTCTggCTTTTGCTAAAGAAGGAGCTCAGGTCATTGCGACGGACATCAACGGAGAGAAACTGAAAGAACTGGATGGAAGTGCAGGAATCAGGACGAAGGAGCTGGATGTGACGAAACAGGACCAAGTGGAAGCTCTGGCTAAAGAGCTGGAGCGAGTCGATGTGCTGTTTAACGTCGCGGGGTTTGTTCATCATGGTACGATCCTGGAGTGTGAGGAGTCGGACTGGGACTTTACCATGAACCTGAACGTACGCAGCATGTACCTGATGATCAGAGCTTTCCTGCCCAAGATGTTGGCTCGCAGGTCGGGGAACATCATTAACATGGCGTCTGTGGCCTCAAGTATCAAAGgtgtagtgaacaggtgtgtgtacagCACGTCTAAAGCAGCAGTCATCGGTCTCACCAAGTCTGTAGCTGCAGATTTCCTCGAGCAGGGGATTCGCTGTAACTGCATCTGCCCCGGAACTGTAGACACTCCGTCACTCAGAGACAGAATCCAGGCCAGACCTGATCCTGAACAGGCGTTTAAGGACTTCATGGCGAGGCAGAAGATCGGCAGGATGTGCACTGCAGAGGAAGTGGctcatctgtgtgtttatctcgcCTCCGATGAGTCGGGATACGTGACCGGAGCTGAACACATCATCGATGGAGGATGGAGTCTGTGATTATTTCACACTGTGATGGAGCTGCTGTGAAATTTACTACAttatgaagggaaaaaaaaaa
>XM_034301307.1
TCGTCTCTCCCGGAAGTTCTCGCAACATCTCGCGAGATTTGGCCGGTTAGTTCAGCTTGCAGTCACGTGATTTCCTCCTGCTCATTAAACCTCAGGAAAATTAAAGGAAAGAGCAGTAGCACTGACCGGGgagaattttaattaaattcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagtcatggGCCGGCTGGACGGGAAGGTGATCGTGTTGTCTGCGGCGGCGCAGGGAATCGGCCGAGCCGCTGCTCTggCTTTTGCTAAAGAAGGAGCTCAGGTCATTGCGACGGACATCAACGGAGAGAAACTGAAAGAACTGGATGGAAGTGCAGGAATCAGGACGAAGGAGCTGGATGTGACGAAACAGGACCAAGTGGAAGCTCTGGCTAAAGAGCTGGAGCGAGTCGATGTGCTGTTTAACGTCGCGGGGTTTGTTCATCATGGTACGATCCTGGAGTGTGAGGAGTCGGACTGGGACTTTACCATGAACCTGAACGTACGCAGCATGTACCTGATGATCAGAGCTTTCCTGCCCAAGATGTTGGCTCGCAGGTCGGGGAACATCATTAACATGGCGTCTGTGGCCTCAAGTATCAAAGgtgtagtgaacaggtgtgtgtacagCACGTCTAAAGCAGCAGTCATCGGTCTCACCAAGTCTGTAGCTGCAGATTTCCTCGAGCAGGGGATTCGCTGTAACTGCATCTGCCCCGGAACTGTAGACACTCCGTCACTCAGAGACAGAATCCAGGCCAGACCTGATCCTGAACAGGCGTTTAAGGACTTCATGGCGAGGCAGAAGATCGGCAGGATGTGCACTGCAGAGGAAGTGGctcatctgtgtgtttatctcgcCTCCGATGAGTCGGGATACGTGACCGGAGCTGAACACATCATCGATGGAGGATGGAGTCTGTGATTATTTCACACTGTGATGGAGCTGCTGTGAAATTTACTACAttatgaagggaaaaaaaaaa
>XM_034301308.1
TGCGTCGTCTCTCCCGGAAGTTCTCGCAACATCTCGCGAGATTTGGCCGGTTAGTTCAGCTTGCAGTCACGTGATTTCCTCCTGCTCATTAAACCTCAGGAAAATTAAAGGAAAGAGCAGTAGCACTGACCGGGgagaattttaattaaattcaggtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagtcatggGCCGGCTGGACGGGAAGGTGATCGTGTTGTCTGCGGCGGCGCAGGGAATCGGCCGAGCCGCTGCTCTggCTTTTGCTAAAGAAGGAGCTCAGGTCATTGCGACGGACATCAACGGAGAGAAACTGAAAGAACTGGATGGAAGTGCAGGAATCAGGACGAAGGAGCTGGATGTGACGAAACAGGACCAAGTGGAAGCTCTGGCTAAAGAGCTGGAGCGAGTCGATGTGCTGTTTAACGTCGCGGGGTTTGTTCATCATGGTACGATCCTGGAGTGTGAGGAGTCGGACTGGGACTTTACCATGAACCTGAACGTACGCAGCATGTACCTGATGATCAGAGCTTTCCTGCCCAAGATGTTGGCTCGCAGGTCGGGGAACATCATTAACATGGCGTCTGTGGCCTCAAGTATCAAAGgtgtagtgaacaggtgtgtgtacagCACGTCTAAAGCAGCAGTCATCGGTCTCACCAAGTCTGTAGCTGCAGATTTCCTCGAGCAGGGGATTCGCTGTAACTGCATCTGCCCCGGAACTGTAGACACTCCGTCACTCAGAGACAGAATCCAGGCCAGACCTGATCCTGAACAGTCGGGATACGTGACCGGAGCTGAACACATCATCGATGGAGGATGGAGTCTGTGATTATTTCACACTGTGATGGAGCTGCTGTGAAATTTACTACAttatgaagggaaaaaaaaaa

Function

symbol description
bdh2 Predicted to enable 3-hydroxybutyrate dehydrogenase activity and oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor. Involved in heme metabolic process. Acts upstream of or within erythrocyte maturation and hemoglobin biosynthetic process. Predicted to be active in cytoplasm. Orthologous to human BDH2 (3-hydroxybutyrate dehydrogenase 2).

NR:

description
3-hydroxybutyrate dehydrogenase type 2

GO:

id name namespace
GO:0019290 siderophore biosynthetic process biological_process
GO:0042168 heme metabolic process biological_process
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0055072 iron ion homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function
GO:0003858 3-hydroxybutyrate dehydrogenase activity molecular_function

KEGG:

id description
K00019 E1.1.1.30, bdh; 3-hydroxybutyrate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301305.1 False 991 mRNA 0.51 12 906885 916289
XM_034301306.1 False 961 mRNA 0.52 11 906882 916289
XM_034301307.1 True 997 mRNA 0.51 12 906885 916289
XM_034301308.1 False 902 mRNA 0.51 11 906881 916289

Neighbor

gene id symbol gene type direction distance location
tacr3a tacr3,LOC108411976,LOC107552719 coding upstream 29488 851333 ~ 877393 (+)
cnga1a si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780,LOC108235024,LOC106517158 coding upstream 74672 827839 ~ 832209 (+)
enam NA coding upstream 80145 823881 ~ 826736 (+)
scpp5 NA coding upstream 84902 813572 ~ 821979 (+)
odam LOC108260526 coding upstream 139121 764306 ~ 767760 (+)
si:dkey-162b23.4 slc9b2 coding downstream 480 916769 ~ 925965 (+)
LOC117596376 LOC108260515,LOC108260518,LOC108260589 coding downstream 14732 931021 ~ 936399 (+)
LOC113545722 NA coding downstream 25672 941961 ~ 950824 (+)
suclg1 suclg1 coding downstream 45405 961694 ~ 979326 (+)
lrrtm1 lrrtm1,LOC107689474,LOC107706126,LOC107551676,LOC107558618 coding downstream 399370 1315659 ~ 1320076 (+)
G389515 NA non-coding upstream 165575 736859 ~ 741306 (+)
G389506 NA non-coding upstream 175716 612303 ~ 731165 (+)
G389505 NA non-coding upstream 248143 604419 ~ 658738 (+)
G389441 NA non-coding upstream 397150 444407 ~ 509731 (+)
G389501 NA non-coding upstream 460903 428491 ~ 445978 (+)
LOC117596382 NA non-coding downstream 22377 938666 ~ 939174 (+)
G389542 NA non-coding downstream 64134 980423 ~ 998703 (+)
G389707 NA non-coding downstream 300440 1216729 ~ 1232853 (+)
G389959 smox non-coding downstream 771508 1687797 ~ 1692987 (+)
G389967 NA non-coding downstream 796751 1713040 ~ 1713242 (+)
G389525 NA other upstream 101665 804360 ~ 805216 (+)
G389524 NA other upstream 106315 787376 ~ 800566 (+)
LOC117596315 NA other upstream 556876 348396 ~ 350005 (+)
LOC113524533 NA other upstream 558546 333139 ~ 348335 (+)
smu1b LOC108260605,LOC108431794,LOC107720315,LOC107692159,LOC107746727,LOC107551820 other upstream 578390 290979 ~ 328491 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other downstream 703008 1619297 ~ 1632772 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other downstream 798976 1715265 ~ 1750762 (+)
LOC113545784 clhc1 other downstream 1448265 2364554 ~ 2386867 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other downstream 2443088 3359377 ~ 3400825 (+)
LOC113545745 ptprd other downstream 3547609 4463898 ~ 4856974 (+)

Expression


Co-expression Network