LOC113545734


Basic Information

Item Value
gene id LOC113545734
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 746707 ~ 749895 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301312.1
GAAAGAACACACAAGCATAATGTGGTCTGACTTTAAAGAGCCTTAGAGATGTTCATAGGAAAAAGTGCAATTCGAGTTTCACACCATTGCAGACGAGACCTGGTTTCAATCTTCAGTCACTCGCTGCTCTcgcttcacacaaacacaatgctGCTGTCTGTCATCTTCGGCTTTATGGAGATCATGGTTTTGTTCCTGACGCCGTCGTCAGCCGTGAAGACTCTGGAGGTTCGGCTCGGAGCGGCGGTGACGCTGCAGTGTGATCTGTCGTATCATTATGAGATTAACTGGCTGAGGATGAACTCGGAAATGAAACCTGAGCTTGTGATGGTTCTGGGGCTGAACAATCACGGACACTTATCCGTCACCTGGAGTACCAACAGCTCCAACTTCCAGGGGTTCATCAATAACCGGTTTATCCAGCTGAGAATCGCACGAGTGTCTGACGCAGACCTCGTCACGTACTTCTGCGCAGCGATAAATGAAAAGCGGCTGGAGTTTAGCGAAGGAATGCGGCTACGTGccGTCTTGGACGTGCAACAGCCTCCGGATCAGAATCTGACACACTGCCAAGGCTCAGACACCAAATCTGAAGACTCGCGAGGACATTTTCACACCCACATGATAATCTCCGGAGTGTTGAACTGCGGCGTTCTCCTCATGGTCTTCACCATCATCGCTGTCCACATCATGACCAGTGAAAGAAGCCTGtgctagtgtttttttttatccattttggTTTACTGAGCAGATGTTTCAGAGAGGCTTTCTGTTATTAACACAACCATGTAACTGAATTGATCTGTTTCTTGTATTACAGACGGATCAGTGGCTTCTCTTTCTCAGTTTAGCAGTTAGCAGCTGTGTATTGCTTGATGTTCCTTCGgctttttttctcagtaaagaTGGTGTCAGATAACTGAGGTACAGCAGAGCATTCTTGgcatagaaataaaattataggcCATGTTGTGATTCATAGAATCAAATGTAAGAGATGTAGACAAATGTAGAtaaatacaacaataataataacaatgtaatatcaaatgaataaacatcaaatgtaaccataaaaccagttttaaaaaatatattggaaatgtataatatttatctAAGGTGTGGTTTCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301312.1 True 1136 mRNA 0.43 4 746707 749895

Neighbor

gene id symbol gene type direction distance location
LOC113545725 NA coding upstream 18790 724127 ~ 727917 (+)
LOC113545735 NA coding upstream 180744 564837 ~ 565963 (+)
LOC113545724 NA coding upstream 228788 512810 ~ 517919 (+)
LOC117596316 LOC108260515,LOC108260518,LOC108260589 coding upstream 247153 461305 ~ 499554 (+)
LOC117596373 LOC108260589,LOC108260518 coding upstream 262800 474115 ~ 483907 (+)
si:dkey-22i16.9 NA coding downstream 1240 751135 ~ 755659 (+)
scpp9 NA coding downstream 8877 758772 ~ 762952 (+)
odam LOC108260526 coding downstream 14411 764306 ~ 767760 (+)
scpp5 NA coding downstream 63677 813572 ~ 821979 (+)
enam NA coding downstream 73986 823881 ~ 826736 (+)
G389515 NA non-coding upstream 5401 736859 ~ 741306 (+)
G389506 NA non-coding upstream 15542 612303 ~ 731165 (+)
G389505 NA non-coding upstream 87969 604419 ~ 658738 (+)
G389441 NA non-coding upstream 236976 444407 ~ 509731 (+)
G389440 NA non-coding upstream 279898 424585 ~ 466809 (+)
LOC117596382 NA non-coding downstream 188771 938666 ~ 939174 (+)
G389542 NA non-coding downstream 230528 980423 ~ 998703 (+)
G389707 NA non-coding downstream 466834 1216729 ~ 1232853 (+)
G389959 smox non-coding downstream 937902 1687797 ~ 1692987 (+)
G389967 NA non-coding downstream 963145 1713040 ~ 1713242 (+)
LOC117596315 NA other upstream 396702 348396 ~ 350005 (+)
LOC113524533 NA other upstream 398372 333139 ~ 348335 (+)
smu1b LOC108260605,LOC108431794,LOC107720315,LOC107692159,LOC107746727,LOC107551820 other upstream 418216 290979 ~ 328491 (+)
G389456 LOC108260598 other upstream 565694 99214 ~ 181013 (+)
G389524 NA other downstream 37481 787376 ~ 800566 (+)
G389525 NA other downstream 54465 804360 ~ 805216 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other downstream 869402 1619297 ~ 1632772 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other downstream 965370 1715265 ~ 1750762 (+)
LOC113545784 clhc1 other downstream 1614659 2364554 ~ 2386867 (+)

Expression


Co-expression Network