scpp9


Basic Information

Item Value
gene id scpp9
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 758772 ~ 762952 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301314.1
GAGCAGGAAGTCATTAGGCTGGAATTTCTCAGGGCCGATATAAGGCCAGTGTCTGAGCCGGGAAGAGCACAGACGCATCTCGAGCTCCTGAACCTTCGCTCTCAGTGAGtttttttaagGTCTTGCTTTCTCAGCCTGCAACATGAAGCTCTTTCTCTTCGTCGCCTTCCTGGCCTCAGCTGCCTGCaTGATTTCAGCGAAGAAACTGCTGGTGGTTGGAGGTTTGAACGGTGGTGTGGTGGGGCTGAACCCCGGCGTGGTGGGGCTGAACCCCGGTGTAGTGGGGCTGAACCCCGGTGTAGTCGGGCTGAACGGAGGGCTGTTGAGTCCCGGGCTGGTGGTTGGAGGCATGAATCCAGCGCTGATCGGAGGTGGTGGAGCTTTCATCGGTCAGCCACCCATTGCTCCAatgaTTCCTGCGATCCCTCCATACATGCTCCAGCCTCAGTTCGGAATGCCCAACGCTCCTCAGCTCCCTCAGCAGCTCCCCTTCCAGCCTAACGGGGGAATGCCCTTCCTGCCCCCTGTGAATCGTCAGGTTGTGCCTCCTCAGCAGCAGGCAGCGGGGCAGATGAACCCGGGGGGAAACGGGCAGCAGCCGCAGGGTGACATGCCCGCCGGCCCAGCGCCACGCTTCAGACGTGCTCTCCGCTGGAGAATGCAGGACAATTCAGTCGCTCAGGTCACTCGGAGCCCGGCTACAACCGAGCACCCTGATGAGTAAAGCCTCCTGACTTTACTGCACAGACGTCTGAGACTTGACCCGGAGCAGctccttaattttttttggaaatgacTGTTAGatgacaaaatatataaatcgtAGAAATAGAATATTGATTATTAGAATTagattagaaattaaaaaagcagATGAATTCATTGTTAGACT

Function

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 15

GO:

id name namespace
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0098552 side of membrane cellular_component
GO:0098562 cytoplasmic side of membrane cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0009898 cytoplasmic side of plasma membrane cellular_component
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301314.1 True 892 mRNA 0.55 10 758772 762952

Neighbor

gene id symbol gene type direction distance location
si:dkey-22i16.9 NA coding upstream 3113 751135 ~ 755659 (+)
LOC113545734 NA coding upstream 8877 746707 ~ 749895 (+)
LOC113545725 NA coding upstream 30855 724127 ~ 727917 (+)
LOC113545735 NA coding upstream 192809 564837 ~ 565963 (+)
LOC113545724 NA coding upstream 240853 512810 ~ 517919 (+)
odam LOC108260526 coding downstream 1354 764306 ~ 767760 (+)
scpp5 NA coding downstream 50620 813572 ~ 821979 (+)
enam NA coding downstream 60929 823881 ~ 826736 (+)
cnga1a si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780,LOC108235024,LOC106517158 coding downstream 64887 827839 ~ 832209 (+)
tacr3a tacr3,LOC108411976,LOC107552719 coding downstream 88381 851333 ~ 877393 (+)
G389515 NA non-coding upstream 17466 736859 ~ 741306 (+)
G389506 NA non-coding upstream 27607 612303 ~ 731165 (+)
G389505 NA non-coding upstream 100034 604419 ~ 658738 (+)
G389441 NA non-coding upstream 249041 444407 ~ 509731 (+)
G389501 NA non-coding upstream 312794 428491 ~ 445978 (+)
LOC117596382 NA non-coding downstream 175714 938666 ~ 939174 (+)
G389542 NA non-coding downstream 217471 980423 ~ 998703 (+)
G389707 NA non-coding downstream 453777 1216729 ~ 1232853 (+)
G389959 smox non-coding downstream 924845 1687797 ~ 1692987 (+)
G389967 NA non-coding downstream 950088 1713040 ~ 1713242 (+)
LOC117596315 NA other upstream 408767 348396 ~ 350005 (+)
LOC113524533 NA other upstream 410437 333139 ~ 348335 (+)
smu1b LOC108260605,LOC108431794,LOC107720315,LOC107692159,LOC107746727,LOC107551820 other upstream 430281 290979 ~ 328491 (+)
G389456 LOC108260598 other upstream 577759 99214 ~ 181013 (+)
G389524 NA other downstream 24424 787376 ~ 800566 (+)
G389525 NA other downstream 41408 804360 ~ 805216 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other downstream 856345 1619297 ~ 1632772 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other downstream 952313 1715265 ~ 1750762 (+)
LOC113545784 clhc1 other downstream 1601602 2364554 ~ 2386867 (+)

Expression


Co-expression Network