LOC113544354 (LOC108260789,LOC108260790)


Basic Information

Item Value
gene id LOC113544354
gene name LOC108260789,LOC108260790
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8289291 ~ 8301011 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301321.1
GGTAACCACCCACACTTATATCTAATACAACTGACTGGCACAGGTGTGTTACTTTGTCACTGAACAAGGATGCGTGAAGATCAGAGTGAAAACCAGCACTGGGCCAAGCAGGCCTGGGACGCTGCTCGGGAAACACCTATTATTGCAGATGAACAAAAACCTCGCAAGCTTGTGAGCTTCATCCAAATCATCACATGTACTCTTGTGGGAATCTTGGTGTTTGGGCTAGCCTTCTTCAGCAAAGCATCTCTGTTGCTATTAATAAACCTTTGCAGTGGAACATCAAAAACCATAGACACCAAACCCTATGCTCTCCTCTTCATTGGGTGCCTTCTAATTGctccaagtgttttactgctgATCAAAAGCATTtggaaaattacttttaaagaTTCAAAAACCCCATCGACGCAAACTTTGCTATGGATTATTTCAGTGGAAACTTTGGTGGCTCTTGGATCTTCCATCCTTATCCTGGTCACTATGCCCAAATTTGACATCCTGACCAACGTGATGCTTCTGAATGGCATTGCCACATTATCAGCCATTCTGCAGGTGGTCGCAAATGCAGTCGCGCACGGAAGGAGACGATTTATTGCGACGTCGTTAGCTGCTGTCGTTTTCttaattgcaggtttttgtctCTTTGCTGTTAACTATctcagagagaaaaatggaaagCAGAACATGGTGCTATTCGTGGGTTTAGCCATAGGAGGCACTTTCCTGGTCTCTTTGAACTGGTGGGAGAACTATGCCATGCTTTTCCGCATCGTCTTCTTCCAGAACACAATCCGGGACATACAAAGGTCCCACAACTTCGCGAACATTGTGACTAGCTTGGTGCGAATTATTGTGACCTTCACTGTCCTTGGAGCTTATGTGAAGCTCTCAGGCCAGGAGTGGTCATCGGTGTTATCAGTCACCAGCTTTACCAGAACCCTCGTCTTGAGTCTGTTTGCCATTCAGGTTCTATCTTCAGCTCTGTGTCGCTACGTGGCCGTGGCTGCGTGCAAAATGCATGCTGTGCGCCGCAGCTTCCTCATTCCCATGATCTTCACATCTCCAGCCACGCTGGGCGCCTTTGTGCTGGCTGTTTGGATTCCCTTTTTGAAGATCTATGAAaagAACAATATCACATTTGCTGACTACTGTAGCACCTTTGCGATTGTGGAAAGCCCAGGGCTTGGCGTCGTGAGACTGATGCTGAGTGATTTAACTCGTGACCTGTGTCAACACATGCCAGACAAGGAGTCTTCGATGGGTTTTGGTCTTCTTGGATCATCTTTGGTGAGCTGGTGGATTGGCCTGGTGCTCTCCACACTCTACATCTGGTTTCTGAACACGGAACGTATTGCCAGGACAAAGGACTTGTTTGTGCGCAACCTTTATGAAGCAGCGTTCATTGACCAGTCCATGCTCTTGAACTCCAAGTTCGAGATTGTGCTCCAGCCAAGACATAACAGGGAAAAGGAGAAGGTGACCATCTACCTCTGTGCAACCATGTGGCATGAGACTACAGATGAAATGATGAAGATGATCATCTCGATGTTCAGGCTGGATAAGTTCCGACCAAAGAAAAACCAATTTAACGATGTTGTTTTTGAGTCTCACATTTATTTCGATGATGCTTTCCTGACCAAAGACAACAAGCGGTGTGTCAATGAGTATGCTGAGACCCTGGTGGAAGTCATCAGAGAAGTTTACATCATATTCACAGAGAATAGCAAAAGTGAATTTAGGGAGAGAAAGCCTCTTCCTGACCAGAAAATCTTCCAGACGCCGTATGGCTGCCGTCTGCAGTACACACTTCCACATGGCAACACACTATTTGTTCACTTTAAGGACAAACACCAGATCCGCCACAAAAAGAGATGGTCTCAGATTATGTACATGTACTACCTACTCGGCTGGAGGCTGCACAAGAACTACTATCAGATGTACAAGCAAAGGGATGTGCATTTGACAAATATTGAAGACCAACTAAAGAAAGCCAAAGAGAATACATACCTTCTGGCTCTAGATGGAGACACAGATTTCCAGCCTTCAGCTGTCATGCTTTTAGTGGATCGGCTCAGGTTGTACCCCGAAGTGGGAGCTGCTTGTGGCAGGATCCATCCTACTGGCACAGGCCCAATGGTATGGTATCAGAAATTTGAGTATGCTGTGGGTCACTGGCTCCAGAAGACAGCTGAGCATGTGTTCGGATCTGTGTTGTGCAGCCCGGGCTGTTTCAGCCTGATGCGTGCAGAGGCACTCATGAGTGACAACGTCATGAAGAGATATACAACAAAAGCAACTGAGGCTTCCCACTATCTACAATATGACCAGGGTGAGGACCGCTGGCTGTGCACACTGCTCCTGCAGCAGGGATGGCGAGTGGAGTACAGTGCTGCCTCTGACTCATACACCAATGCTCCACAGGAGTTCAAGGAGTTTTACAACCAACGGCGGCGCTGGGGCCCTTCCACAATGGCCAACACTCTGGACCTTCTTTCCAGTGGCAGTGTCACTGCACGAATGAACAAGTCCATATCACGACCTTACATTCTCTACCAGACTATCACCATGGCTGCCTCAATCTTGGGCCCAGCTACGGTCTGCCTCATGATTGCAGGAAGCCTTAAATTCGTCTTCAGTTTAGATGCCAATGTTGCACTTTTGATAGCAGTTGTTCCTCCTGCAGTCTACATAATTCTCTGCTATTATCTTGGGCAAGCAAAATCAGACTTACAAATCAGCATTGCTGGCATCATGAGCATAATCTATGCTTTTCTGATGACAGCAACCATCTTATCTATTATAGGGGACATGGTAAAGCAGAACACTTTTGTGACCCCAAGCGGCTTGTTCTTCGTTGGCATAGTCATCATGTACGTTGTCACGGCTCTTCTTCATCCTCATGAGTTCCATCTTGTCATCTTTGGCTTCCTTTACTTCATCTGCATCCCCAGTGGCTACCTGCTGCTGGCAATTTACTCCATGGTCAACATGAACAATGTGTCCTGGGGCACACGCGAATCTGCCAACCAGACCACTGGATCTGAAGGAAACATCCGGAAAAATGTCAAGTGCCAGAAGCTGTTCAAAATATGTGGCTACAATCTGGAGGTTCAACtgaacaaagaagaaaaagtgatGGAGAATGCACCTCAACCCACATCTTTGAATGCTGAAACCAAAGTGAATGATGAAACCCCACCTAAAGAAAGACAGTTACCTTTAATTGAGCACTCTTTTGTTCAACAGTTGGTAGAAAGCTCTGGTGAACTTGCCCTTATTGAGAAGAGCCTTAACCCGGAAGAAGAATCGTTTTGGAAGGACCTTATTGAGCAATACCTAAAACCATTAGAgactgacaaaaaaaaggaggaaagaatCAAAGAAGATCTGAAAGAGCTACGCAACAAGGcaacttttgtgttttttatctgCAACGTCCTGTGGATTGTGGCTACTTTCTTTATGCAATCCATGGGCAATACAGTCAACATCCCCATCCCAATGACTTATGCCAATGGAACAGTTGACCCTGACAAGAAGCTTTATATCGATCCTATTGGACTGATGTTCCTCATCAGTTTTGCAGGCCTCCTTATTATCCAGTTTTTTGCTATGCTGTGGCACAgagtCCAGACTTTAATCCACTTTATTGCTTACACTGGAACTGAGGCCGTTGTTAACAGGAGGACGAGAAGATCTTTGGCACTGGTCACTGAATTCCCTGAAGAAAATAATTTTCTTTAGGAGAAAAACGATTAAAACGaaaaaattgattaaaagcCTACAAGTGGATGATCTAACAGATGAGCTGTTATGGGAAACTTCGCAACAACACACAAACCTGGCAAACCTTGCTTATTGGGATTGAAAGTTGTTACCACTGTGCTGTTAGGcctttttgtttaatgttgtttacAATTCTTTGTTACTTTTCCTtgcactgtattattattattattattattattattattattattattattattattataaacaccgtcaatgacatactgtatgttctaGTGTGATAGATTGTTATCAGGAAGCTGTTTGTCAATGCTGTAAATATGTAAGTTATTAAGTATTTAAAACagtcatttaaaatgtcattaaaaacagacagagacaaaggaaaattcagtaataatagttcatggctataaatgtaaaaatgtcctATAAAAATGAAGTCCTGTGGAAAAAGTggttaaaatggttaaaaaggattaaaatgtaaaagtccTGCATGagagattaaaattttttaaaaacagttaatatgaccaaaaaaaaaaaaaaaaaaaaaaacgtttaaaaAGGTGTAATGATACCTACCTGTAAGGAGTTAATCCATGGTCGACTTTGTTGATCTTTTGAGAAGTGAAATCTGTGATTGATTAGTCATGCCTGCAAAGTCCGGAAGGGGGCGCTCTCGCTGCGATGCTTCGTTCTCGCTGAAGCTGCTTGAGAGGAAGCATCGTGTTCGAGTTCCCTTATTTACATCTCCCCTTTTCAGGTATAAAATTGAATATatctaaaatgcatttattcttTTGAATCTTGGTATATGACTGCTAAAACGTTTTGTTAGTATTCCGTTAGCATACTGACTGAAGTTGAGTGTTTTAAAAGCATTATTTAGTTCTTTTGACGGTTAATTGATACTGATGAGCATCTAGCTAAACTCTGTTTTTGCAGTGGCTTGTCCAGAATGACACGTGGTTAACACAGCTACAGCACATATTGTGTGCAGTTTGACTATGTTTGGCTCAGCAAGACACACATTTAGAGCATTAAGTTTGCTAGTGTTTGTGTGGGTgacttttattatgtttatgtgtgttttaaagataAAGTGTGctcattgtgtgtaaatgtgataaGGAACACAGAAAATAGCACATAGAAGAGACACATTGCTGGAAATGTTTTATAGGATAGATTTTATTTGCAGTGCATTAGAGTTTGATAATTTAAGCTTatgtttaatgatttatagactattttcatgaatacctACCTCATACTTGATTCttcctgttaaagaaaaaaagagaaatgttatTATACCTACTTGTTTACTTACCTGTGAAGGAAATCCGGGAGAAGAAGAAATTAGATTAGAAAATTGAGtttataatataaagaaaatgcatATTGGtgttgtaatattttacatttaaagaaattctgtaaCTTTGTAACTAATCCTGAAAATAAATCGTTCACGCTGAAGCTGCCTGACAGGAA

Function

GO: NA

KEGG:

id description
K00698 CHS1; chitin synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301321.1 True 5256 mRNA 0.42 20 8289291 8301011

Neighbor

gene id symbol gene type direction distance location
ddx21 ddx21,LOC108414772,LOC106612469,LOC107725010,LOC107693788,LOC100194728 coding upstream 9831 8263979 ~ 8279460 (+)
si:ch1073-291c23.2 LOC108260910 coding upstream 36624 8240639 ~ 8252667 (+)
vit vit coding upstream 51799 8207670 ~ 8237492 (+)
cilk1 ick,LOC108261001,LOC108256381 coding upstream 120303 8154051 ~ 8168988 (+)
LOC113544397 mark1,LOC108260538,LOC108414040 coding upstream 163853 8067433 ~ 8125438 (+)
LOC113544353 LOC108260790,LOC108260789 coding downstream 28654 8329665 ~ 8350126 (+)
chs1 chs2 coding downstream 77403 8378414 ~ 8389447 (+)
LOC113544399 sult6b1 coding downstream 99783 8400794 ~ 8410541 (+)
slc30a6 slc30a6 coding downstream 113462 8414473 ~ 8437196 (+)
LOC113544248 LOC108260666 coding downstream 173873 8474884 ~ 8486535 (+)
G394262 NA non-coding upstream 3952 8285006 ~ 8285339 (+)
G394260 NA non-coding upstream 9087 8279534 ~ 8280204 (+)
G394229 NA non-coding upstream 54131 8234679 ~ 8235160 (+)
G394156 NA non-coding upstream 135513 8152460 ~ 8153778 (+)
G394155 LOC108413271 non-coding upstream 136903 8151403 ~ 8152388 (+)
G394291 NA non-coding downstream 119671 8420682 ~ 8440437 (+)
G394306 NA non-coding downstream 165258 8466269 ~ 8466602 (+)
G394373 NA non-coding downstream 359685 8660696 ~ 8661230 (+)
G394520 NA non-coding downstream 551533 8852544 ~ 8852767 (+)
G394527 NA non-coding downstream 611869 8912880 ~ 8913084 (+)
G394251 NA other upstream 29989 8258928 ~ 8259302 (+)
G393467 slit1 other upstream 858381 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 1388351 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 1670609 6614859 ~ 6618682 (+)
lrba lrba other upstream 2050213 6039414 ~ 6239078 (+)
LOC113544250 NA other downstream 834946 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1646730 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1799926 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1898312 10199323 ~ 10239199 (+)
G395242 NA other downstream 2205579 10506590 ~ 10516369 (+)

Expression


Co-expression Network