LOC117596340


Basic Information

Item Value
gene id LOC117596340
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7155377 ~ 7163031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577477.1
TGGATACAAAACAGGCAAAGGTCATTTGACAGGTCATGAATCGCACATGCAGAAGCTGCAGCAATCCAAGCGGCATTGTTCACATGCTCACCTGCATACCTTATGGACATCTGGATAATTAAAAGCaacatccactagatggcatgtcagagccaaaacatccctgtctaTCTGGTTTCCAagttaaactgtaaaatgtttaatgactTCTTGCACAGCAATGTTAAACAGAATGACAAGCTCTgttaaaactttctgctgtcatcatgattgttgtcatgagctgcatctcaaatagAAAACGATGACCTTAGGTTCGAAAGTATTTACTGAgttagaaaatccagaagatgGGTATGCAAAACAGGTCTGAAGACTActtgagaggtttttaaaattcaaccACTAAACATAATAGGGAAACCAGTTGGTATTATTACTCAATAATTGTCTAGAACAGTACATTTTTGAGACACAACACTAGTTTGGTTTGTTAGTTGTGGTCACCCTGTCACATGGTGCAATACTGTCCCCACTATTTACACTGGTATTGCATTGCACTGAGATGTAGCTTTAATTGTGGTGGCCATCTTGCATGTGCGTACGCATCGTTGAAAGCACGATGTGGTGGCCATCTTGCATGTGCGTACGCATCGTTGAAAGCACGTATAATCCAGCCTTCAGAGGTTGCCATCTCCACAATACTGAACTGTTTACCATAATTAGCAATCAGTTCAGAATCCACCAATCAGTCTCACTTAGTTGCAATCAATTCTCATTTGCCTCTGCACATGCACACCTTTTGTATGGAGCATTTTTGCAGACTGATATACGAAAATATATAcgaacacatttaaaaaaggctgtaatgtaaaaaaagagGACAGGGTTTGAATACTTGGTGAATGCACTGTATGCTAAAATACTAAGACAATTCTATACTGCAAGATGTATTACTACATTACCTTAACACAGTCAGGCAGTGGTTCTGTGCCCATAGATTTTAGTGCATCTTCCAATAGAGAGAGGACACTCTCACAGCGTTCAGTCAACTGTTCCAGGCTCTACAAACAAGGAGAGGAAACCAAGAACAGTTCATAAGGTTATATGGGGCTGATTCTTGCTCTTCCTCTGTAAGAATGAGAACACAGCCAAGGCCTGCTGGTTCCTgagcctgaacacacacatgcataaagTGCAGCCACTCTGCTGTAAACACCAGAGGGTGCTGGGATTCGGGAACCAGGACCTCCTGGACATTGCGGCCACCCAAAGCTAGACACTTGAGGGCCAGGCGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577477.1 True 1300 lncRNA 0.42 3 7155377 7163031

Neighbor

gene id symbol gene type direction distance location
LOC113544234 LOC108260940 coding upstream 113465 7034279 ~ 7041912 (+)
casq1b LOC108260939,LOC108442777,LOC106577953,LOC100194596,LOC107726186 coding upstream 122647 7000205 ~ 7032730 (+)
zgc:92594 LOC108260947 coding upstream 208654 6939707 ~ 6946723 (+)
sb:cb1081 NA coding upstream 218004 6926560 ~ 6937373 (+)
supt16h supt16h coding upstream 379033 6762469 ~ 6776344 (+)
LOC113544270 LOC108260482 coding downstream 138608 7301639 ~ 7306530 (+)
si:ch211-63p21.1 LOC108260971,LOC108437862 coding downstream 238338 7401369 ~ 7409804 (+)
LOC113544382 LOC108260553 coding downstream 250165 7413196 ~ 7419635 (+)
LOC113544435 LOC108260879,LOC108437854,LOC105900835,LOC103357730 coding downstream 457069 7620100 ~ 7636047 (+)
LOC113544437 xpo5 coding downstream 795852 7958883 ~ 7978619 (+)
LOC113544421 NA non-coding upstream 3808 7133096 ~ 7151569 (+)
G393301 NA non-coding upstream 69362 7085797 ~ 7086015 (+)
G393293 NA non-coding upstream 93707 7055328 ~ 7061670 (+)
G393150 NA non-coding upstream 206069 6944819 ~ 6949308 (+)
G393116 NA non-coding upstream 273851 6877171 ~ 6881526 (+)
G393351 NA non-coding downstream 14789 7177820 ~ 7245118 (+)
G393394 NA non-coding downstream 128207 7291238 ~ 7349517 (+)
G393450 zgc:55733,LOC108260929,LOC107707310,LOC107657188 non-coding downstream 204849 7367880 ~ 7371501 (+)
G393484 NA non-coding downstream 285603 7448634 ~ 7528555 (+)
G393994 NA non-coding downstream 759114 7922145 ~ 7922346 (+)
LOC117596330 NA other upstream 254437 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 536695 6614859 ~ 6618682 (+)
lrba lrba other upstream 916299 6039414 ~ 6239078 (+)
LOC113544283 fbxw7,LOC107745860 other upstream 1244785 5831544 ~ 5910592 (+)
LOC113545745 ptprd other upstream 2298403 4463898 ~ 4856974 (+)
G393467 slit1 other downstream 264587 7427618 ~ 7430910 (+)
G394251 NA other downstream 1095897 8258928 ~ 8259302 (+)
LOC113544250 NA other downstream 1972926 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 2784710 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 2937906 10100937 ~ 10116924 (+)

Expression


Co-expression Network