LOC117596392


Basic Information

Item Value
gene id LOC117596392
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5648334 ~ 5649863 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577525.1
CTGGACCACGATTTTGAGTCTCCAGTGGAGTCCTGGCTTTCCAAATAATGTCAATCACAATGACAACTGTGCTTTGGTTAATAATAGCCTGTTAGTGGATAAACAATGCAACAGCCTATTCTATTTCTTCTGTCACACAAAGTATACAGTGAGAAGGTATGTAGTGAAACTGCAGGTTAAAGGAGACAAGAGTGTATTTGATCCTGTGGTTCAACCTGCCATTTTACAGCAGATCGTACAGAAACTCAAGGAACATGGCATATCGAAGGAAACAAACGTGACCTGGAGGGTGCAGCCAGATGGAAACATCTTTCACAAGAAAAGCAAATATGACCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577525.1 True 337 lncRNA 0.42 3 5648334 5649863

Neighbor

gene id symbol gene type direction distance location
si:cabz01076231.1 LOC108260839,LOC108436834,LOC107656773,LOC107574011,LOC107709299 coding upstream 36719 5606322 ~ 5611615 (+)
LOC113544404 LOC108260837,LOC108436836 coding upstream 54765 5589900 ~ 5593569 (+)
epdl1 LOC108260763 coding upstream 205609 5437417 ~ 5442725 (+)
alpk1 alpk1 coding upstream 211453 5428037 ~ 5436881 (+)
LOC113545754 LOC108260764 coding upstream 229244 5413890 ~ 5419090 (+)
tmem154 NA coding downstream 109078 5758941 ~ 5773253 (+)
gatb gatb,LOC106602370 coding downstream 315621 5965484 ~ 5979895 (+)
sh3d19 NA coding downstream 359400 6009263 ~ 6026147 (+)
ncapg ncapg coding downstream 696885 6346748 ~ 6357763 (+)
LOC113544357 slc24a2,LOC108260976,LOC106577456,LOC107377079 coding downstream 765431 6415294 ~ 6462526 (+)
G391586 NA non-coding upstream 105973 5542035 ~ 5542361 (+)
G391643 NA non-coding upstream 106878 5541164 ~ 5541456 (+)
G391580 NA non-coding upstream 111919 5534935 ~ 5536415 (+)
G391585 NA non-coding upstream 114064 5531838 ~ 5534270 (+)
G391576 NA non-coding upstream 159019 5486476 ~ 5489315 (+)
G391665 dchs2 non-coding downstream 22747 5672610 ~ 5673169 (+)
G391666 dchs2 non-coding downstream 25169 5675032 ~ 5675931 (+)
G391667 dchs2 non-coding downstream 27600 5677463 ~ 5677698 (+)
G391668 dchs2 non-coding downstream 28504 5678367 ~ 5679191 (+)
G391669 NA non-coding downstream 30586 5680449 ~ 5680688 (+)
LOC113545745 ptprd other upstream 791360 4463898 ~ 4856974 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other upstream 2247509 3359377 ~ 3400825 (+)
LOC113545784 clhc1 other upstream 3261467 2364554 ~ 2386867 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other upstream 3897572 1715265 ~ 1750762 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other upstream 4015562 1619297 ~ 1632772 (+)
LOC113544283 fbxw7,LOC107745860 other downstream 181681 5831544 ~ 5910592 (+)
lrba lrba other downstream 389551 6039414 ~ 6239078 (+)
LOC113544406 LOC108260665,LOC108260638 other downstream 964996 6614859 ~ 6618682 (+)
LOC117596330 NA other downstream 1247130 6896993 ~ 6900940 (+)
G393467 slit1 other downstream 1777755 7427618 ~ 7430910 (+)

Expression


Co-expression Network