pick1 (pick1)


Basic Information

Item Value
gene id pick1
gene name pick1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 312408 ~ 325545 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU472228
CCGGAAGTGACGCAGGCAGCAGGTACACATCACACAGAAAGAGATGGAACAGCtggaaacatttttaatcagaaataaacGCGTTTTGTGACAATGCGTTAATAAGGACTCATAATTTACTTCCGATCCACCGTCACTTCCTGTTCTGGAAGCGTTTATACGGTTCGGGAGGCTGTACCCTGGTGCCGGTTCGGGAGGCTGTAACCTGGTGCCGGTTCGGGAGGCTGTAACCTGGTGCCGGTTCGGGAGGCTGTACCCTGGTGCCGGTTCGGGAGGCTGTAACCTGGTGCCGGTTCGGGAGGCTGTACCCTGGTGCCGGTTCGGGAGGCTGTAACCTGGTGCCGGTTCGGGAGGCTGTACCCTGGTGCCGGTTCGGGAGGCTGTACCCTGGTGCCGGTTCGGGAGGCTGTAACCTGGCATGTTCTCAGACATCATGGACTACGAGCTAGAAGAAGATAAGCTagggATTCCCACAGTTCCTGGAACAGTGACCCTGAAGAAGGATGCGCAGAACCTGATTGGGATCAGTATAGGGGGCGGGGCTCAGTACTGCCCCTGTCTCTACATCGTACAGgtgtTTGATAACACCCCAGCAGCACTGGACGGGACATTAGCAGCAGGTGATGAGATCACAGGTGTAAACGGTAAACCAGTGAAGGGCAAGACCAAGGTGGAGGTGGCCAAGATGATCCAggctgtacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaact
>XM_034301553.1
TGCCGGTTCGGGAGGCTGTACCCTGGTGCCGGTTCGGGAGGCTGTACCCTGGTGCCGGTTCGGGAGGCTGTAACCTGGCATGTTCTCAGACATCATGGACTACGAGCTAGAAGAAGATAAGCTagggATTCCCACAGTTCCTGGAACAGTGACCCTGAAGAAGGATGCGCAGAACCTGATTGGGATCAGTATAGGGGGCGGGGCTCAGTACTGCCCCTGTCTCTACATCGTACAGgtgtTTGATAACACCCCAGCAGCACTGGACGGGACATTAGCAGCAGGTGATGAGATCACAGGTGTAAACGGTAAACCAGTGAAGGGCAAGACCAAGGTGGAGGTGGCCAAGATGATCCAggctgtacaggtgtgtgtGATACACTATAATAAACTGCAAATCCCTCGATATCCCAAACAGGGCAAAATATCACACATagtGTTGAAGAAGGTGAAGCACCGGTTGGTGGAGAACATGAGCTCAGGAACAGCAGACGCACTGGGACTGAGCAGAGCCATCCtgtgtgtagatggacTTGTAAAGAAACTGGAGGAACTGGAGAAGACTGCAGAGCTGTACAAAGggttGATGGAACACAGTAAGCTGCTCAGAGTTGTTCTTAAGCTCTTTAAGACACACAGAGCGTTTGGTGATGTATTCTCGGTGATCGGTGTTCGGGAGCCGCAGGCTGCAGCCAGTGAGGCGTTTGTAAAATTTGCAGAAGCTCATCGTAACATTGAGAAATATGGCATCCAGCTGCTCAAAACCATCAAACCTatgctGCATGATTTGAACACATACCTTCACAAAGCGATTCCAGACACCAAACTCACCATCCGCAAATACCTGGATGTCAAGTTCGAGTACCTGtcataCTGTCTGAAGGTGAAAGAGATGGACGATGAGGAGTACAGCTGCATCgcgctGGGAGAGCCGCTGTACCGCGTCAGCACGGGGAATTATGAGTATCGTCTGATTCTGCGCTGTCGACAGGAAGCTCGCGCTCGATTCGCTAAAATGCGTAAAGACGTTCTGGAGAAGATCGAGCTGCTCGACCAGAAACACGtTCAGGACATTGTGTTCCAGCTGCAGAGGTTCGTCTCGGGGATGTCGCGTTACTATGACGAGTGTTACGCCGTGCTGAAGGAGGCCGACGTCTTCCCCATCGAGGTGGACCTCTCACGCACCACCCTGAACTACACCGCCCCTAACTACGAGGACGAGGATGAGGAGGGCGAGGAAGAgcgagaggaggagaagagtgAACAGACCGAGAACGGAGCGGAGAAGCTGATCGATGATGAATGAGTGAAGGAGTGAAGGagaacagtgagagagagagagagagagagagagagagatgcggagtgagtgtgaagagtgtgagtgtgtattgtttgttatattttcacacattcctgctgtgtgtgtttaactgtaGTCACGGTCGAGGTAATGAGCAGCACTAAACATTACTCCCTAAATCCCCGTCTAAGCCCTTCATCATGCAGCTCACTCGCTCTCTCCGTCCTGCTGTAGTACGCCGCCTTCTCTCACAGCTAATGTGCTCCACTGACACGCAGTTAGGGATGCATCAGTACCGTGTTTTTCAGTGTGCTAGTACTGATACTGATGCTCAGGTTAGTAACCTACCTAGTATTAATCGGTCAGGGACACCACTGAACGTTTTACACAGCTCTGTTTGTGGTGGTTGCTAACAGTGAGCGCCTCGGGCTGAGCTTCATGTTCCAGAGGTGAAGAtgtttaaacagtgtgtttaatggagaGCATGAGGCGTGTGCAGAGCAGCATCAGTGCTCTGAATAGCAGCTTAACAGCAAAGTGTAGACACTGATGAGCGCGGGGAAAGGGAAGTGCGTgagtgtctcagtgctcgcaggGCGGAACTGCTCTCAGGTGCGACAGCTTCTCCACACACTCGCGTCACTGCTCCATGGCACCTTGCGTTGGTTTTATGACCACGCTGGTCTGTGTGCTCAGGTCGGACTGCCTCATACTCCTCCTCCAGTACGGCAATCGGTGCATCCCTACactgtgtgatttgggacagaGCGTTACTCACACTGCAGAATTTTAACTTTGCCCTTCGCATTAAAAAGACGTAAAAcggttttgttcatttcataaACTGGGATTTATCATGACTTTATCGTGACTTTTATGTATTTAAGCAGGTTTGACACCAACAGCTAAATGGTGTTATAAATGCGTATCTGTGTTCACCAGCTCTGTCCTGCTGATGGCAATGGGAGCTTTGTCCCAGGTTTCAGCCTACTGTAGTCTACAGTATGTtaaatatacaccgatcagccataacattaaaacctctGACAGATgcagtgaacagtcagttcttgaagttgatgtgttggaggaaaaatgggcaagtgtgaggatc

Function

symbol description
pick1 Predicted to enable phospholipid binding activity and protein kinase C binding activity. Predicted to be involved in several processes, including dendritic spine maintenance; positive regulation of receptor internalization; and regulation of Arp2/3 complex-mediated actin nucleation. Predicted to be located in several cellular components, including cytoskeleton; perinuclear region of cytoplasm; and synapse. Predicted to be active in several cellular components, including cytoplasmic vesicle; postsynaptic density; and trans-Golgi network membrane. Orthologous to human PICK1 (protein interacting with PRKCA 1).

NR:

description
PREDICTED: PRKCA-binding protein

GO:

id name namespace
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K24062 PICK1; PRKCA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU472228 False 751 TUCP 0.55 4 319734 325545
XM_034301553.1 True 2414 mRNA 0.50 14 312408 324714

Neighbor

gene id symbol gene type direction distance location
plbd1 plbd1 coding downstream 2172 298761 ~ 310236 (-)
LOC117596420 NA coding downstream 25271 146928 ~ 287137 (-)
LOC117596421 NA coding downstream 195641 79388 ~ 116767 (-)
LOC113525084 LOC108272484 coding upstream 3316 328861 ~ 339349 (-)
LOC113525087 LOC108272484 coding upstream 15526 341071 ~ 350569 (-)
LOC113525089 LOC108272484 coding upstream 47598 373143 ~ 399186 (-)
LOC113525088 LOC108272487,LOC108272485,LOC108272486 coding upstream 92472 418017 ~ 459183 (-)
LOC113525090 NA coding upstream 202716 528261 ~ 561037 (-)
trnar-ccu_18 NA non-coding downstream 1753 310583 ~ 310655 (-)
G398158 NA non-coding downstream 4999 307118 ~ 307409 (-)
LOC117596423 NA non-coding downstream 6535 305073 ~ 305873 (-)
G398140 NA non-coding downstream 119275 169832 ~ 193133 (-)
G398135 LOC107387363 non-coding downstream 204633 107329 ~ 107775 (-)
LOC117596419 NA non-coding upstream 88920 414465 ~ 417319 (-)
G398304 NA non-coding upstream 269573 595118 ~ 595989 (-)
G398338 NA non-coding upstream 316857 642402 ~ 644009 (-)
G398393 NA non-coding upstream 516391 841936 ~ 846790 (-)
G398394 NA non-coding upstream 522200 847745 ~ 848753 (-)
LOC117596396 NA other upstream 148205 473750 ~ 482008 (-)
LOC117596444 smdt1 other upstream 414698 740243 ~ 890302 (-)
fam234b fam234b other upstream 566375 891920 ~ 906375 (-)
LOC117596481 NA other upstream 582080 907625 ~ 907779 (-)
LOC117596482 NA other upstream 584524 910069 ~ 910223 (-)

Expression


Co-expression Network