LOC117596396


Basic Information

Item Value
gene id LOC117596396
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 473750 ~ 482008 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU472265
CTTCATTGTAAGGTATTAGATAGTAATTCtggtttctctgtctctgacttTGAAATGCTGTCTCCTGTGGTTTCTTTTAGGTGGTTTATGCTGCACTTGGCATCCTTGTTGCTGACTGAGAAACAGAAAGTATCTTTTGATCAAGAGAACTCGACGTTCACGAGGCGGTTTTCAAAAGAACAAAACCTTTTGTCTGAAATCTTTTTCTCAAACGTTTCTCTACACTGCAATAATCAGCTACAGAGGTCATCTACAAACTGAAGATGAGTCTCACAGATGAAATCACCACCCATGGAGACCCATTGTTAAAGGGAACAAATATAGAAGACCTCATTAAAAAGAACAAGCCTTTGTGTGAGCTTGTTCAGCAGTGTGGAGGTATATATCAcgtatttaacaataaaaacctGGGGAGCAGAGACCAGGTCAGTGTGCTACTGCAAAAAATAGACAGAATGATGGAGAACAAAGGAGGAATCTATGACTCCagacaggaggaggagaaaggaggagaaagcaggataagaagaaaagaagatgaacaaaaacagaaagaggaagaacaaAGATACAACAAAGATACTGATActgctg
>XM_034301441.1
TTAGGTGGTTTATGCTGCACTTGGCATCCTTGTTGCTGACTGAGAAACAGAAAGTATCTTTTGATCAAGAGAACTCGACGTTCACGAGGCGGTTTTCAAAAGAACAAAACCTTTTGTCTGAAATCTTTTTCTCAAACGTTTCTCTACACTGCAATAATCAGCTACAGAGGTCATCTACAAACTGAAGATGAGTCTCACAGATGAAATCACCACCCATGGAGACCCATTGTTAAAGGGAACAAATATAGAAGACCTCATTAAAAAGAACAAGCCTTTGTGTGAGCTTGTTCAGCAGTGTGGAGGTATATATCAcgtatttaacaataaaaacctGGGGAGCAGAGACCAGGTCAGTGTGCTACTGCAAAAAATAGACAGAATGATGGAGAACAAAGGAGGAATCTATGACTCCagacaggaggaggagaaaggaggagaaagcaggataagaagaaaagaagatgaacaaaaacagaaagaggaagaacaaAGATACAACAAAGATACTGATActgctgctggtgctgcttTTGGTTCTTCTATTGGTGCTGCTGGTTATGCTGCTACTTGTGCTGCTGGTGGCGCTGCTGGTGGTGCTGCTAATGGTGGTGCTGCTAGTGATGCTGCTAAtagtgctgctggtggtgctgCAAGTGGTGCTGCTACTGGTGGTGCTGCTACTGATGCTGCAGGTGGTGCTGCAAGTGGTGCTGTTAGTGGGGCTGCAAGTAGTGCTGCTAgtggtgctgctggtggtgctgtggtggtggtgctggtgctgcAATTGGTGCTGCAAttggtgctgctgctggtgctgcAATTGGTGCTGCTACTGGTGCTGCAAttggtgctgctgctggtgctgcAAGTGGTGCTGCTACTGGTGCTGCAAgtggtgctgctggtggtgctgCAAGTGGTGCTGCAAGTGGTGCTGCAAgtggtgctgctggtggtgctgCAAGTGGTGCTGCAAgtggtgctgctggtggtgctgCTGGTGGTACTGCAAGTGGTGCTGCAGGTGGTGCTGCTGGTGGTACTGCAAGTGGTGCTGCTGGTGGTACTGCAAGTGGTGCTGCAAGTGGTGCTGCAGGTGGTGCTGCTGGTGGTACTGCAAGTGGTGCTGCAGGTGGTGCTGCTGGTGGTACTGCAAgtggtgctgctggtggtgctgCTGGTGGTACTGCAAgtggtgctgctggtggtgctgttggTGCTTTTACTTGTCTTGCTTTTACTTATGCTATATTTCTTACTGTAG

Function

GO:

id name namespace
GO:0009615 response to virus biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05168 Herpes simplex virus 1 infection
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU472265 False 594 TUCP 0.40 2 474566 482008
XM_034301441.1 True 1264 mRNA 0.50 3 473750 481932

Neighbor

gene id symbol gene type direction distance location
LOC113525088 LOC108272487,LOC108272485,LOC108272486 coding downstream 14567 418017 ~ 459183 (-)
LOC113525089 LOC108272484 coding downstream 74564 373143 ~ 399186 (-)
LOC113525087 LOC108272484 coding downstream 123181 341071 ~ 350569 (-)
LOC113525084 LOC108272484 coding downstream 134401 328861 ~ 339349 (-)
plbd1 plbd1 coding downstream 163514 298761 ~ 310236 (-)
LOC113525090 NA coding upstream 46253 528261 ~ 561037 (-)
LOC113525082 LOC108272487,LOC108272486 coding upstream 89693 571701 ~ 588652 (-)
LOC113547081 NA coding upstream 162040 644048 ~ 645951 (-)
LOC117595703 LOC108272505,LOC108272504 coding upstream 170490 652498 ~ 661063 (-)
sox10 sox10 coding upstream 195895 677903 ~ 692387 (-)
LOC117596419 NA non-coding downstream 56431 414465 ~ 417319 (-)
trnar-ccu_18 NA non-coding downstream 163095 310583 ~ 310655 (-)
G398158 NA non-coding downstream 166341 307118 ~ 307409 (-)
LOC117596423 NA non-coding downstream 167877 305073 ~ 305873 (-)
G398140 NA non-coding downstream 280617 169832 ~ 193133 (-)
G398304 NA non-coding upstream 113110 595118 ~ 595989 (-)
G398338 NA non-coding upstream 160394 642402 ~ 644009 (-)
G398393 NA non-coding upstream 359928 841936 ~ 846790 (-)
G398394 NA non-coding upstream 365737 847745 ~ 848753 (-)
G398395 NA non-coding upstream 368442 850450 ~ 851339 (-)
pick1 pick1 other downstream 148205 312408 ~ 325545 (-)
LOC117596444 smdt1 other upstream 258235 740243 ~ 890302 (-)
fam234b fam234b other upstream 409912 891920 ~ 906375 (-)
LOC117596481 NA other upstream 425617 907625 ~ 907779 (-)
LOC117596482 NA other upstream 428061 910069 ~ 910223 (-)
LOC113536357 NA other upstream 432190 914198 ~ 914352 (-)

Expression


Co-expression Network