Gene
RNA
| Item | Value |
|---|---|
| gene id | G398304 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 595118 ~ 595989 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU472424 | True | 332 | lncRNA | 0.34 | 2 | 595118 | 595989 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113525082 | LOC108272487,LOC108272486 | coding | downstream | 6466 | 571701 ~ 588652 (-) |
| LOC113525090 | NA | coding | downstream | 34081 | 528261 ~ 561037 (-) |
| LOC113525088 | LOC108272487,LOC108272485,LOC108272486 | coding | downstream | 135935 | 418017 ~ 459183 (-) |
| LOC113525089 | LOC108272484 | coding | downstream | 195932 | 373143 ~ 399186 (-) |
| LOC113525087 | LOC108272484 | coding | downstream | 244549 | 341071 ~ 350569 (-) |
| LOC113547081 | NA | coding | upstream | 48059 | 644048 ~ 645951 (-) |
| LOC117595703 | LOC108272505,LOC108272504 | coding | upstream | 56509 | 652498 ~ 661063 (-) |
| sox10 | sox10 | coding | upstream | 81914 | 677903 ~ 692387 (-) |
| LOC113541895 | kcnj4 | coding | upstream | 130961 | 726950 ~ 734134 (-) |
| LOC113527787 | NA | coding | upstream | 151921 | 747910 ~ 751320 (-) |
| LOC117596419 | NA | non-coding | downstream | 177799 | 414465 ~ 417319 (-) |
| trnar-ccu_18 | NA | non-coding | downstream | 284463 | 310583 ~ 310655 (-) |
| G398158 | NA | non-coding | downstream | 287709 | 307118 ~ 307409 (-) |
| LOC117596423 | NA | non-coding | downstream | 289245 | 305073 ~ 305873 (-) |
| G398140 | NA | non-coding | downstream | 401985 | 169832 ~ 193133 (-) |
| G398338 | NA | non-coding | upstream | 46413 | 642402 ~ 644009 (-) |
| G398393 | NA | non-coding | upstream | 245947 | 841936 ~ 846790 (-) |
| G398394 | NA | non-coding | upstream | 251756 | 847745 ~ 848753 (-) |
| G398395 | NA | non-coding | upstream | 254461 | 850450 ~ 851339 (-) |
| G398371 | NA | non-coding | upstream | 283036 | 879025 ~ 881892 (-) |
| LOC117596396 | NA | other | downstream | 113110 | 473750 ~ 482008 (-) |
| pick1 | pick1 | other | downstream | 269573 | 312408 ~ 325545 (-) |
| LOC117596444 | smdt1 | other | upstream | 144254 | 740243 ~ 890302 (-) |
| fam234b | fam234b | other | upstream | 295931 | 891920 ~ 906375 (-) |
| LOC117596481 | NA | other | upstream | 311636 | 907625 ~ 907779 (-) |
| LOC117596482 | NA | other | upstream | 314080 | 910069 ~ 910223 (-) |
| LOC113536357 | NA | other | upstream | 318209 | 914198 ~ 914352 (-) |
