fmc1 (fmc1)


Basic Information

Item Value
gene id fmc1
gene name fmc1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 951202 ~ 954200 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU472483
GCTGCTGAACGCTGCACTGCTGCTGATTtatccaagatggccgccctcAGCTCTCCACTTCGGATCTGTCGGGGCATTTTAAAAGAGCTTAGATATTTAAAAGGGCCTGAATATAAAGGCACAATGATGTACAGTTACGTGATGGAACAATTCCGAAAAAATCAGGTGACTAGTGAGCGTCACTGCCGTGCTCAGAAGGAGGCAGTCCATGCGTCCCACACATACCTGTGTCTGTTAGAGTCAACGCGGCGTCATCTGGAGCTGCATAATCAGTACCATGGGAAAGGAGAGCGCCCCCCGGAGGAAGTGGCCCGCCTTGTAGGATTGCGCTTACCCACACAGCCCGGCGGTAAGGGCTGGGAGGAGTGAGAGACTGAGTAAAGGATGGAGAGCAGGTGGAGGACCAGCTGTCAGTCAGAGACTTTCTCTAAATGTACAGTGTGTTcgttctcactgtgtgtgtgtgtgtgtggatttgtaAACATTGTTTTGtcttcaaataaataaagtttatt
>XM_026910201.2
CTTTGAGCTTGCATTTTCGGTCTCCAGGACGAATGGACGTCAACGGAACTGAAAAATCTAGTGTGACCGCCGATTAACAAAATTATCTCAGAGTTTCCCAGTCGGAATTACGACTTGAGGGGTCATTCATGTGTAACTTCCTACTGGGAAACTCGTATTTACGATAAATTCAGGTAGCACTTGAAGGCAGCATACGAAGAACGAGATTCCTCCATCTTTCCTGAACCAGAAGTTTAAACGCTGCTGAACGCTGCACTGCTGCTGATTtatccaagatggccgccctcAGCTCTCCACTTCGGATCTGTCGGGGCATTTTAAAAGAGCTTAGATATTTAAAAGGGCCTGAATATAAAGGCACAATGATGTACAGTTACGTGATGGAACAATTCCGAAAAAATCAGGTGACTAGTGAGCGTCACTGCCGTGCTCAGAAGGAGGCAGTCCATGCGTCCCACACATACCTGTGTCTGTTAGAGTCAACGCGGCGTCATCTGGAGCTGCATAATCAGTACCATGGGAAAGGAGAGCGCCCCCCGGAGGAAGTGGCCCGCCTTGTAGGATTGCGCTTACCCACACAGCCCGGCGGTAAGGGCTGGGAGGAGTGAGAGACTGAGTAAAGGATGGAGAGCAGGTGGAGGACCAGCTGTCAGTCAGAGACTTTCTCTAAATGTACAGTGTGTTcgttctcactgtgtgtgtgtgtgtgtggatttgtaAACATTGTTTTGtcttcaaataaataaagtttattctGA

Function

symbol description
fmc1 Involved in mitochondrial proton-transporting ATP synthase complex assembly. Located in mitochondrion.

NR:

description
PREDICTED: UPF0562 protein C7orf55 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472483 False 515 TUCP 0.49 2 951206 953961
XM_026910201.2 True 758 mRNA 0.47 2 951202 954200

Neighbor

gene id symbol gene type direction distance location
LOC113527139 NA coding downstream 111761 833892 ~ 839441 (-)
LOC113527126 NA coding downstream 186075 756001 ~ 765127 (-)
LOC113527787 NA coding downstream 199882 747910 ~ 751320 (-)
LOC113541895 kcnj4 coding downstream 217068 726950 ~ 734134 (-)
sox10 sox10 coding downstream 258815 677903 ~ 692387 (-)
LOC117596399 NA coding upstream 154493 1108693 ~ 1111909 (-)
LOC113524091 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983 coding upstream 161434 1115634 ~ 1124106 (-)
LOC117596401 NA coding upstream 219200 1173400 ~ 1176207 (-)
LOC113524089 emp2,LOC100304972 coding upstream 288587 1242787 ~ 1250542 (-)
zgc:65811 NA coding upstream 301473 1255673 ~ 1267846 (-)
G398369 NA non-coding downstream 657 895071 ~ 950545 (-)
G398413 NA non-coding downstream 6716 942257 ~ 944486 (-)
G398403 NA non-coding downstream 9455 883189 ~ 941747 (-)
G398371 NA non-coding downstream 69310 879025 ~ 881892 (-)
G398395 NA non-coding downstream 99863 850450 ~ 851339 (-)
G398433 LOC108272747 non-coding upstream 60743 1014943 ~ 1083831 (-)
G398437 NA non-coding upstream 71220 1025420 ~ 1102347 (-)
G398446 NA non-coding upstream 122628 1076828 ~ 1078028 (-)
G398459 NA non-coding upstream 182437 1136637 ~ 1139668 (-)
LOC117596417 NA non-coding upstream 234353 1188553 ~ 1191451 (-)
G398408 poldip3 other downstream 30699 919264 ~ 920503 (-)
LOC113536357 NA other downstream 36850 914198 ~ 914352 (-)
LOC117596482 NA other downstream 40979 910069 ~ 910223 (-)
LOC117596481 NA other downstream 43423 907625 ~ 907779 (-)
fam234b fam234b other downstream 44827 891920 ~ 906375 (-)
LOC117596427 NA other upstream 322078 1276278 ~ 1317636 (-)
LOC117596459 NA other upstream 503632 1457832 ~ 1462070 (-)
LOC113524069 LOC108261293,LOC108261210 other upstream 507919 1462119 ~ 1516314 (-)
st13 st13,f10a1 other upstream 611595 1565795 ~ 1591734 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 775890 1730090 ~ 1881058 (-)

Expression


Co-expression Network