G398364


Basic Information

Item Value
gene id G398364
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 949692 ~ 996770 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU472490
cactcactcacacacacacacacactcacacacacacacacatacactctcagaggaaaaggagagatacaatacatatatgtataataaGATTTGCTCCGGTTCTAATATCCAGTACAAGCCAATCTGAGAAAAATCTGTGATGTCATAACCGTGCAGTTATGTGACTTCACAGGAAGGGGTGGGGCTTTAGTTGTTCTTCTTATCTGGCTGGTTTTGAGGAGGATAGTACGGAGGAGGCtgatcctgagagag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472490 True 255 lncRNA 0.44 2 949692 996770

Neighbor

gene id symbol gene type direction distance location
LOC113527139 NA coding downstream 110251 833892 ~ 839441 (-)
LOC113527126 NA coding downstream 184565 756001 ~ 765127 (-)
LOC113527787 NA coding downstream 198372 747910 ~ 751320 (-)
LOC113541895 kcnj4 coding downstream 215558 726950 ~ 734134 (-)
sox10 sox10 coding downstream 257305 677903 ~ 692387 (-)
LOC117596399 NA coding upstream 111923 1108693 ~ 1111909 (-)
LOC113524091 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983 coding upstream 118864 1115634 ~ 1124106 (-)
LOC117596401 NA coding upstream 176630 1173400 ~ 1176207 (-)
LOC113524089 emp2,LOC100304972 coding upstream 246017 1242787 ~ 1250542 (-)
zgc:65811 NA coding upstream 258903 1255673 ~ 1267846 (-)
G398413 NA non-coding downstream 5206 942257 ~ 944486 (-)
G398403 NA non-coding downstream 7945 883189 ~ 941747 (-)
G398371 NA non-coding downstream 67800 879025 ~ 881892 (-)
G398395 NA non-coding downstream 98353 850450 ~ 851339 (-)
G398394 NA non-coding downstream 100939 847745 ~ 848753 (-)
G398433 LOC108272747 non-coding upstream 18173 1014943 ~ 1083831 (-)
G398437 NA non-coding upstream 28650 1025420 ~ 1102347 (-)
G398446 NA non-coding upstream 80058 1076828 ~ 1078028 (-)
G398459 NA non-coding upstream 139867 1136637 ~ 1139668 (-)
LOC117596417 NA non-coding upstream 191783 1188553 ~ 1191451 (-)
G398408 poldip3 other downstream 29189 919264 ~ 920503 (-)
LOC113536357 NA other downstream 35340 914198 ~ 914352 (-)
LOC117596482 NA other downstream 39469 910069 ~ 910223 (-)
LOC117596481 NA other downstream 41913 907625 ~ 907779 (-)
fam234b fam234b other downstream 43317 891920 ~ 906375 (-)
LOC117596427 NA other upstream 279508 1276278 ~ 1317636 (-)
LOC117596459 NA other upstream 461062 1457832 ~ 1462070 (-)
LOC113524069 LOC108261293,LOC108261210 other upstream 465349 1462119 ~ 1516314 (-)
st13 st13,f10a1 other upstream 569025 1565795 ~ 1591734 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 733320 1730090 ~ 1881058 (-)

Expression


Co-expression Network