G398369


Basic Information

Item Value
gene id G398369
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 895071 ~ 950545 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU472495
TAGAAtctaagatatttatttattattcaccaATATAATTTTCCAGCAGCTGCAAATCAGAGAAAGGAATCATGAACAACAaaggaaactgtgtgtgtgtgtgtgtgagtgtgtgagtaagagTCAATACACCATACTGTGATAATCGATTTTACTCACATCATAGTTTACAATATTATCACAAGATATTATGGGATTGCTTTTTCTGAGGAAAcgcgcacacacacacgcacacacacacacacacacacacacatttataaacactCACCTGTGTGATAGTGTACCTGTGACACAATGTAACTCTACTATAATTAAATAACCTTACActttcattatttctctctctctctgtctgtgtgtgtctctttctctctttctctctctctctctctctgtctctcttctctttctctctatgtgtgtgtgtctctctttctctttctctctctctctctgtctgtgtgtatgtgtctctctctctctctgtctgcgtgtatgtgtctctctctctctctgtctgcgtgtatgtgtctctctctctctctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472495 True 549 lncRNA 0.39 2 895071 950545

Neighbor

gene id symbol gene type direction distance location
LOC113527139 NA coding downstream 55630 833892 ~ 839441 (-)
LOC113527126 NA coding downstream 129944 756001 ~ 765127 (-)
LOC113527787 NA coding downstream 143751 747910 ~ 751320 (-)
LOC113541895 kcnj4 coding downstream 160937 726950 ~ 734134 (-)
sox10 sox10 coding downstream 202684 677903 ~ 692387 (-)
LOC117596399 NA coding upstream 158148 1108693 ~ 1111909 (-)
LOC113524091 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983 coding upstream 165089 1115634 ~ 1124106 (-)
LOC117596401 NA coding upstream 222855 1173400 ~ 1176207 (-)
LOC113524089 emp2,LOC100304972 coding upstream 292242 1242787 ~ 1250542 (-)
zgc:65811 NA coding upstream 305128 1255673 ~ 1267846 (-)
G398371 NA non-coding downstream 13179 879025 ~ 881892 (-)
G398395 NA non-coding downstream 43732 850450 ~ 851339 (-)
G398394 NA non-coding downstream 46318 847745 ~ 848753 (-)
G398393 NA non-coding downstream 48281 841936 ~ 846790 (-)
G398338 NA non-coding downstream 251062 642402 ~ 644009 (-)
G398433 LOC108272747 non-coding upstream 64398 1014943 ~ 1083831 (-)
G398437 NA non-coding upstream 74875 1025420 ~ 1102347 (-)
G398446 NA non-coding upstream 126283 1076828 ~ 1078028 (-)
G398459 NA non-coding upstream 186092 1136637 ~ 1139668 (-)
LOC117596417 NA non-coding upstream 238008 1188553 ~ 1191451 (-)
LOC117596444 smdt1 other downstream 4769 740243 ~ 890302 (-)
LOC117596396 NA other downstream 413063 473750 ~ 482008 (-)
pick1 pick1 other downstream 569526 312408 ~ 325545 (-)
fmc1 fmc1 other upstream 657 951202 ~ 954200 (-)
LOC117596427 NA other upstream 325733 1276278 ~ 1317636 (-)
LOC117596459 NA other upstream 507287 1457832 ~ 1462070 (-)
LOC113524069 LOC108261293,LOC108261210 other upstream 511574 1462119 ~ 1516314 (-)
st13 st13,f10a1 other upstream 615250 1565795 ~ 1591734 (-)

Expression


Co-expression Network