G398408 (poldip3)


Basic Information

Item Value
gene id G398408
gene name poldip3
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 919264 ~ 920503 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU472541
ctcctcctcattgGACGCCGTctGAGCTGCTCTGCTTGGTACATTGATGCGAATCCCGCTGGTCATACCAACAGGCCTCTGGATAGTTTTGGTGATCTTGAGCGGAGCTGCAGATCCCTGGCTGGGCAGCGATGATACGCTTCTCTTCAGACTCAGCCTATCACGTGCATCCACCACCTTTGTGATCCCGCCTCTGGGCTGTATGGCCACGCCCACTCTGGTTCCGAGTCCCTGGTTGGTAGGGAAGGTCCTGACGCCGGTGCTGCTGGGATTGCTGCTGTTGTTCTGGATGTGGATGTGTGGGATTGGGGTCTGAGAGCTGGTTACTAAGGGAGAATCCTGGACCTGCTGCTGTTTACGAGAGTTTATGGTCTGTCTGGCGTCCTGCACCGCGCACTCGCAGCGCCCCCTCTGGCCTGAATACGGAAACGCGCATCATTCTGACCCAGCTTCTCTCTCGCATCCTTCACCTGGAAC

Function

symbol description
poldip3 Predicted to enable mRNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in nuclear speck. Orthologous to human POLDIP3 (DNA polymerase delta interacting protein 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472541 True 477 TUCP 0.57 3 919264 920503

Neighbor

gene id symbol gene type direction distance location
LOC113527139 NA coding downstream 79823 833892 ~ 839441 (-)
LOC113527126 NA coding downstream 154137 756001 ~ 765127 (-)
LOC113527787 NA coding downstream 167944 747910 ~ 751320 (-)
LOC113541895 kcnj4 coding downstream 185130 726950 ~ 734134 (-)
sox10 sox10 coding downstream 226877 677903 ~ 692387 (-)
LOC117596399 NA coding upstream 188190 1108693 ~ 1111909 (-)
LOC113524091 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983 coding upstream 195131 1115634 ~ 1124106 (-)
LOC117596401 NA coding upstream 252897 1173400 ~ 1176207 (-)
LOC113524089 emp2,LOC100304972 coding upstream 322284 1242787 ~ 1250542 (-)
zgc:65811 NA coding upstream 335170 1255673 ~ 1267846 (-)
G398371 NA non-coding downstream 37372 879025 ~ 881892 (-)
G398395 NA non-coding downstream 67925 850450 ~ 851339 (-)
G398394 NA non-coding downstream 70511 847745 ~ 848753 (-)
G398393 NA non-coding downstream 72474 841936 ~ 846790 (-)
G398338 NA non-coding downstream 275255 642402 ~ 644009 (-)
G398413 NA non-coding upstream 21754 942257 ~ 944486 (-)
G398364 NA non-coding upstream 29189 949692 ~ 996770 (-)
G398433 LOC108272747 non-coding upstream 94440 1014943 ~ 1083831 (-)
G398437 NA non-coding upstream 104917 1025420 ~ 1102347 (-)
G398446 NA non-coding upstream 156325 1076828 ~ 1078028 (-)
LOC113536357 NA other downstream 4912 914198 ~ 914352 (-)
LOC117596482 NA other downstream 9041 910069 ~ 910223 (-)
LOC117596481 NA other downstream 11485 907625 ~ 907779 (-)
fam234b fam234b other downstream 12889 891920 ~ 906375 (-)
LOC117596444 smdt1 other downstream 28962 740243 ~ 890302 (-)
fmc1 fmc1 other upstream 30699 951202 ~ 954200 (-)
LOC117596427 NA other upstream 355775 1276278 ~ 1317636 (-)
LOC117596459 NA other upstream 537329 1457832 ~ 1462070 (-)
LOC113524069 LOC108261293,LOC108261210 other upstream 541616 1462119 ~ 1516314 (-)
st13 st13,f10a1 other upstream 645292 1565795 ~ 1591734 (-)

Expression


Co-expression Network