G398542 (LOC108272479,LOC108272979,LOC108266218,LOC108266219,LOC108266898)


Basic Information

Item Value
gene id G398542
gene name LOC108272479,LOC108272979,LOC108266218,LOC108266219,LOC108266898
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1341193 ~ 1341827 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU472714
CCAAGAGTAGCTGCTTGCCATGGCTTCTTCTTTGTCTACCAGGTCTCCCTGGTAAGGCCCAAAGTGGGCACCAACTGGAACAGTGTCCCCCTTATTAAACACTCCCAGGAATGCATCAGGAATACCAGATTGCCGAAGCTCTAGACCAGGGGGAAGGGTTTGTCTGGCTCGATCTGAAACCCCCCTTGGAACAGGGGTATCAGGGAGGAAGAGAGCTGGACCATGTATCTCACACTTGTTGATGAAGAAGGATCTGCAATACTCACAGTCTAGAAGGACAGAACAAGTGGAAGTAAATATACAATATCATGTTGGTGACTCCGGGCCCACAGGTGTGGGAGTAAGGCCTGGGCCTGTGTGCTGGCACTGCAGGGATTGGCAGGGATTGGCAGGCATTGCCAGGACCAATACCATCTGATGGAGGTGGGGGTGTTGGTCTGGGTCTCCGATGCTCTTCAGGCGGTCCCGATCGAGCGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472714 True 479 lncRNA 0.54 3 1341193 1341827

Neighbor

gene id symbol gene type direction distance location
zgc:65811 NA coding downstream 73347 1255673 ~ 1267846 (-)
LOC113524089 emp2,LOC100304972 coding downstream 90651 1242787 ~ 1250542 (-)
LOC117596401 NA coding downstream 164986 1173400 ~ 1176207 (-)
LOC113524091 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983 coding downstream 217087 1115634 ~ 1124106 (-)
LOC117596399 NA coding downstream 229284 1108693 ~ 1111909 (-)
LOC113524073 NA coding upstream 41864 1383691 ~ 1387474 (-)
LOC113524067 LOC108272977,LOC108280066,LOC108261293,LOC108261210 coding upstream 50601 1392428 ~ 1407764 (-)
LOC117596456 LOC108272977,LOC108279574,LOC108280069,LOC108261293,LOC108261210 coding upstream 78062 1419889 ~ 1447053 (-)
LOC113524072 LOC108272977,LOC108279536,LOC108280069,LOC108261210 coding upstream 180680 1522507 ~ 1538673 (-)
cbx7a LOC108273000,LOC103373459 coding upstream 297742 1639569 ~ 1649047 (-)
G398509 NA non-coding downstream 15175 1252043 ~ 1326018 (-)
G398516 wbp11,LOC107751605 non-coding downstream 17463 1320816 ~ 1323730 (-)
LOC117596417 NA non-coding downstream 149742 1188553 ~ 1191451 (-)
G398459 NA non-coding downstream 201525 1136637 ~ 1139668 (-)
G398437 NA non-coding downstream 238846 1025420 ~ 1102347 (-)
G398545 LOC108272479 non-coding upstream 5112 1346939 ~ 1363036 (-)
G398549 NA non-coding upstream 9768 1351595 ~ 1365941 (-)
G398665 NA non-coding upstream 142358 1484185 ~ 1485548 (-)
G398679 LOC108272998 non-coding upstream 211800 1553627 ~ 1554940 (-)
G398667 NA non-coding upstream 222632 1564459 ~ 1577378 (-)
LOC117596427 NA other downstream 23557 1276278 ~ 1317636 (-)
fmc1 fmc1 other downstream 386993 951202 ~ 954200 (-)
G398408 poldip3 other downstream 420690 919264 ~ 920503 (-)
LOC113536357 NA other downstream 426841 914198 ~ 914352 (-)
LOC117596482 NA other downstream 430970 910069 ~ 910223 (-)
LOC117596459 NA other upstream 116005 1457832 ~ 1462070 (-)
LOC113524069 LOC108261293,LOC108261210 other upstream 120292 1462119 ~ 1516314 (-)
st13 st13,f10a1 other upstream 223968 1565795 ~ 1591734 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 388263 1730090 ~ 1881058 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 1013082 2354909 ~ 2377631 (-)

Expression


Co-expression Network