G398549


Basic Information

Item Value
gene id G398549
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1351595 ~ 1365941 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU472723
ACTGAACGCATCATCTCAGCCACTGTGAGAAACTGCCAGGGCTAAAGCAAAGATGCAGTTGAAGGTAACGCCAAGATCCTTAGCGTACTTCTCTTCATACCACACCAAAAGCTCCTGTCTTGGTTTGATGGGTCGACAGCAACGGTAGAAAATCTGCCCTTGATACTGGAATGCCACCAGtctctgtcgagctacacatgctactcctgagataccagtgatcctgacc

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0002252 immune effector process biological_process
GO:0002253 activation of immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472723 True 229 lncRNA 0.49 3 1351595 1365941

Neighbor

gene id symbol gene type direction distance location
zgc:65811 NA coding downstream 83749 1255673 ~ 1267846 (-)
LOC113524089 emp2,LOC100304972 coding downstream 101053 1242787 ~ 1250542 (-)
LOC117596401 NA coding downstream 175388 1173400 ~ 1176207 (-)
LOC113524091 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983 coding downstream 227489 1115634 ~ 1124106 (-)
LOC117596399 NA coding downstream 239686 1108693 ~ 1111909 (-)
LOC113524073 NA coding upstream 17750 1383691 ~ 1387474 (-)
LOC113524067 LOC108272977,LOC108280066,LOC108261293,LOC108261210 coding upstream 26487 1392428 ~ 1407764 (-)
LOC117596456 LOC108272977,LOC108279574,LOC108280069,LOC108261293,LOC108261210 coding upstream 53948 1419889 ~ 1447053 (-)
LOC113524072 LOC108272977,LOC108279536,LOC108280069,LOC108261210 coding upstream 156566 1522507 ~ 1538673 (-)
cbx7a LOC108273000,LOC103373459 coding upstream 273628 1639569 ~ 1649047 (-)
G398542 LOC108272479,LOC108272979,LOC108266218,LOC108266219,LOC108266898 non-coding downstream 9768 1341193 ~ 1341827 (-)
G398509 NA non-coding downstream 25577 1252043 ~ 1326018 (-)
G398516 wbp11,LOC107751605 non-coding downstream 27865 1320816 ~ 1323730 (-)
LOC117596417 NA non-coding downstream 160144 1188553 ~ 1191451 (-)
G398459 NA non-coding downstream 211927 1136637 ~ 1139668 (-)
G398665 NA non-coding upstream 118244 1484185 ~ 1485548 (-)
G398679 LOC108272998 non-coding upstream 187686 1553627 ~ 1554940 (-)
G398667 NA non-coding upstream 198518 1564459 ~ 1577378 (-)
G398686 NA non-coding upstream 200843 1566784 ~ 1578770 (-)
G398697 NA non-coding upstream 236295 1602236 ~ 1603986 (-)
LOC117596427 NA other downstream 33959 1276278 ~ 1317636 (-)
fmc1 fmc1 other downstream 397395 951202 ~ 954200 (-)
G398408 poldip3 other downstream 431092 919264 ~ 920503 (-)
LOC113536357 NA other downstream 437243 914198 ~ 914352 (-)
LOC117596482 NA other downstream 441372 910069 ~ 910223 (-)
LOC117596459 NA other upstream 91891 1457832 ~ 1462070 (-)
LOC113524069 LOC108261293,LOC108261210 other upstream 96178 1462119 ~ 1516314 (-)
st13 st13,f10a1 other upstream 199854 1565795 ~ 1591734 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 364149 1730090 ~ 1881058 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 988968 2354909 ~ 2377631 (-)

Expression


Co-expression Network