G398679 (LOC108272998)


Basic Information

Item Value
gene id G398679
gene name LOC108272998
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1553627 ~ 1554940 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU472915
GCAGCTGTATGTTTAAATCAAAACACATATCAGACCCCAGGTTAATTAGGTTGAGGAATGTACAAAGGACTAGCTAACAATTAATACCATGttgtctataaaaaaaaaccctctcttGTGTTTGCCCAGCCACATTCTGAGCAGTGATACAGCGTCTTCTCCTGTTTGACTGTGCTGGTGTTGTTGAAGAGCATGTGTCGTTAAAGCTCTTCCCATGCTGTATCCTGATATAGTTTCTTCTTactgtgaatgcgctggtgttggTGGAGAGTACTCTGCTGACTGAAAGTcctcccacactgtgagcagccATAGggcttctctccagtgtgaatgcgcAGGTGCTGTTTGAGAGTACCATTCTGACTAAAACTCTTCCCGCATTGCGAGCACTGATATGGCTTCTCTcccgtgtgaatgcgctggtgtatTTGGAGAGAACTCTGTCGGTTAAATGTTTTaccacactgtgaacagtgatgGAGCTTttctccagtgtgaatgcgTGTATGTGACTGTAGAGTACCGTGTTGAGTAAAACTTTTCCCACAGtgtgagcagtgATACggcttttctcctgtgtgaatgcgcttaTGTGATCTCAGACTACTTTGGTGGAcaaaactcttcccacattGTGAGCAGTGATACAGCTTCTCTCCTTTGTGAATGCGCTCATGGACCTTCACATCACTCTGTGTAGAAAAACTCTTCCCACAGTGGGAGCAGttatacggcttctctcctgtatgGTGTGATTTGAGCTGAGGACCATGAACTTCACACTTGTTAATACTGAAGGATTTGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472915 True 810 lncRNA 0.45 2 1553627 1554940

Neighbor

gene id symbol gene type direction distance location
LOC113524072 LOC108272977,LOC108279536,LOC108280069,LOC108261210 coding downstream 14954 1522507 ~ 1538673 (-)
LOC117596456 LOC108272977,LOC108279574,LOC108280069,LOC108261293,LOC108261210 coding downstream 106574 1419889 ~ 1447053 (-)
LOC113524067 LOC108272977,LOC108280066,LOC108261293,LOC108261210 coding downstream 145863 1392428 ~ 1407764 (-)
LOC113524073 NA coding downstream 166153 1383691 ~ 1387474 (-)
zgc:65811 NA coding downstream 285781 1255673 ~ 1267846 (-)
cbx7a LOC108273000,LOC103373459 coding upstream 84629 1639569 ~ 1649047 (-)
mief1 mief1 coding upstream 128658 1683598 ~ 1690681 (-)
LOC113524053 NA coding upstream 171961 1726901 ~ 1729117 (-)
LOC113524064 NA coding upstream 211764 1766704 ~ 1768749 (-)
LOC117596405 NA coding upstream 253582 1808522 ~ 1809853 (-)
G398665 NA non-coding downstream 68079 1484185 ~ 1485548 (-)
G398549 NA non-coding downstream 187686 1351595 ~ 1365941 (-)
G398545 LOC108272479 non-coding downstream 190591 1346939 ~ 1363036 (-)
G398542 LOC108272479,LOC108272979,LOC108266218,LOC108266219,LOC108266898 non-coding downstream 211800 1341193 ~ 1341827 (-)
G398509 NA non-coding downstream 227609 1252043 ~ 1326018 (-)
G398667 NA non-coding upstream 9519 1564459 ~ 1577378 (-)
G398686 NA non-coding upstream 11844 1566784 ~ 1578770 (-)
G398697 NA non-coding upstream 47296 1602236 ~ 1603986 (-)
G398718 NA non-coding upstream 92760 1647700 ~ 1665491 (-)
G398689 NA non-coding upstream 103810 1658750 ~ 1661237 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 37313 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 91557 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 235991 1276278 ~ 1317636 (-)
fmc1 fmc1 other downstream 599427 951202 ~ 954200 (-)
G398408 poldip3 other downstream 633124 919264 ~ 920503 (-)
st13 st13,f10a1 other upstream 10855 1565795 ~ 1591734 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 175150 1730090 ~ 1881058 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 799969 2354909 ~ 2377631 (-)
G399028 NA other upstream 817356 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 1406773 2961713 ~ 2964157 (-)

Expression


Co-expression Network