G398697


Basic Information

Item Value
gene id G398697
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1602236 ~ 1603986 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU472936
ctagcCTGAAGAGAATTAAAGTAAACTTTACTATACCATTTGCATCGCTCGCAGAACCAGAGAGCGCCGGTGAGGACAATTTAGGCCTTTTGGCTGAAGACGGCCCCGAGTCCAAAACATTATCGGCCATATTTCTCCACCGATTCTGTATTAAAGCATATATATCCGCACAGGATAGGAAAATTCCCCTGTCTGAGTGCGTAAATATTCTAGGAATTTCTTAACTCTGGAGGATTTTCTTAAATCTGAAAGTTCCACTATTATAATTCCAATTTCCTTCAGGATTATTTCACCGATTTAGATAAATTATAGAGAAACTGGCGTGACTTTGTTCCTCCTTGGATTATCATAGTGTTTTGGATGCTGGAGCTTTGTTGGGACGCCAATCAACCTGGGGATTGATGGGAAACTCAATGCAGTCAGAAGCCAAACAGAATTCGGTGTCTGCGTCATGAACTTCGCCTCATGCAGTGGTCCTGAAAACGTCCACAATCCTGAAATTCTCCATGGCAGTCAGAGCCATCTGTCTCCAGCTTATCCGTTCAATTCCAGAAGTCGTCCGGGACGTCCTCAAATCTCGCCTCATCGATACAGCAACTTTGTGATACGTACAAAAATGGACACAAGTTACATTTCACACAACACCATTCAGTCCAGATAAAGTCATCTGTGCTTCTGTAGGACTAATAGAACAAACCAACTGGCACGCAATACCACTGAAGTGCTGAAGAACCGTCCGGATGCACCACCAACTCCATGAACACTCGTGTTCCTGAATGCACTTTAGTGTTTTTGTGACGGGACGGAGCAAATCGTGCAGGGCTGCATCTCTCACACACGTATGCATGGATCTACAGCGAAATCAGCTCAGAAGAAACGTCCTCCTGCATGCACGACAACCTCCAATGTTCATGCATGCAAAGAAATGGTTTGCAGTTCAGGACCTGATGGCTCAGTATGACGAGGAAAACAAAAACTCTTAGTCCAATTAGTCATTTAGTTTGATAAggaatctgattatttttttttttgcaatagtGTTATTGGTGGACAGTGGAGAACTGTGGCAGTGCTGGATGGATCTGCTCACTTTGTGGTTCAAACCAACTCTAATCAAGCTTGCAAGTAGAAGAAATGGGGAAGAAATGGGCGAGCAGTCAGGTGAAGGAGAAAACCACATCGACTGGGATGAAGCAGAGGGAATGCAGCTGCATTAATGCTGAAGCTTTTAGATCAGATGGGAGATGCACTCGGAGACATTTCGGGGTTCTGCTGAATGCGCCCCAGGCTTTTCTGGTGCCGTGACCCCCTGCGCCTTCATTtctcccttctttctctctttctctcacttcttCTCGCTTCTTTTCTTCACTTTGTTGTGGACGTCCTTCACTTTTACGCCGTCCTCCGTCTTTTCATTTCGCAAGCAGTCCATCCATTCCGTCCTCGCCGacgaaaaaaaagtgtaaaagaaaacaatacactaatttctttcctctttcctctttctctccgtctcttGTCTCTTCGGCagggtttttttcttttttcctccttcttttcctcctttcctctctctcctgctctttgAGAAGACAGCGGGTCTCGGTGCGCGCCGTGGCCGGGCTTGGAGCGGCTCTCTTCGGTCTGCCTCTCGTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472936 True 1662 lncRNA 0.46 2 1602236 1603986

Neighbor

gene id symbol gene type direction distance location
LOC113524072 LOC108272977,LOC108279536,LOC108280069,LOC108261210 coding downstream 63563 1522507 ~ 1538673 (-)
LOC117596456 LOC108272977,LOC108279574,LOC108280069,LOC108261293,LOC108261210 coding downstream 155183 1419889 ~ 1447053 (-)
LOC113524067 LOC108272977,LOC108280066,LOC108261293,LOC108261210 coding downstream 194472 1392428 ~ 1407764 (-)
LOC113524073 NA coding downstream 214762 1383691 ~ 1387474 (-)
zgc:65811 NA coding downstream 334390 1255673 ~ 1267846 (-)
cbx7a LOC108273000,LOC103373459 coding upstream 35583 1639569 ~ 1649047 (-)
mief1 mief1 coding upstream 79612 1683598 ~ 1690681 (-)
LOC113524053 NA coding upstream 122915 1726901 ~ 1729117 (-)
LOC113524064 NA coding upstream 162718 1766704 ~ 1768749 (-)
LOC117596405 NA coding upstream 204536 1808522 ~ 1809853 (-)
G398686 NA non-coding downstream 23466 1566784 ~ 1578770 (-)
G398667 NA non-coding downstream 24858 1564459 ~ 1577378 (-)
G398679 LOC108272998 non-coding downstream 47296 1553627 ~ 1554940 (-)
G398665 NA non-coding downstream 116688 1484185 ~ 1485548 (-)
G398549 NA non-coding downstream 236295 1351595 ~ 1365941 (-)
G398718 NA non-coding upstream 43714 1647700 ~ 1665491 (-)
G398689 NA non-coding upstream 54764 1658750 ~ 1661237 (-)
G398730 NA non-coding upstream 73202 1677188 ~ 1679682 (-)
G398732 NA non-coding upstream 87486 1691472 ~ 1691916 (-)
G398743 mpst,zgc:162544,LOC108273010,LOC105890773 non-coding upstream 111050 1715036 ~ 1716463 (-)
st13 st13,f10a1 other downstream 10502 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 85922 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 140166 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 284600 1276278 ~ 1317636 (-)
fmc1 fmc1 other downstream 648036 951202 ~ 954200 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 126104 1730090 ~ 1881058 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 750923 2354909 ~ 2377631 (-)
G399028 NA other upstream 768310 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 1357727 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1413304 3017290 ~ 3295273 (-)

Expression


Co-expression Network