G398718


Basic Information

Item Value
gene id G398718
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1647700 ~ 1665491 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU472969
cCTGATAATGGCGTCACTGCTCACAACAACAAACAGCATTAATCCCACAATCAGTGCGAGATTCTTCATGTTTTACACCTCAAagcaccaacaaacaaacaaacaaacaaacaaaccgaGTGCAAGTTCAAAGTTtgttaactctctctctctctctctctctctctctcacctccagCCCACACATTTCTctcaaatattataaaaaaaatacgtTTTATTCCACCTCCTAAACTGTGCGTCAGTGGATGATTAGCAACATGCTAACATCCGTGACGCggcttcttgttgttgttgttgttgttgttgttgtcgcgTGCCCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472969 True 324 lncRNA 0.42 2 1647700 1665491

Neighbor

gene id symbol gene type direction distance location
LOC113524072 LOC108272977,LOC108279536,LOC108280069,LOC108261210 coding downstream 109027 1522507 ~ 1538673 (-)
LOC117596456 LOC108272977,LOC108279574,LOC108280069,LOC108261293,LOC108261210 coding downstream 200647 1419889 ~ 1447053 (-)
LOC113524067 LOC108272977,LOC108280066,LOC108261293,LOC108261210 coding downstream 239936 1392428 ~ 1407764 (-)
LOC113524073 NA coding downstream 260226 1383691 ~ 1387474 (-)
zgc:65811 NA coding downstream 379854 1255673 ~ 1267846 (-)
mief1 mief1 coding upstream 18107 1683598 ~ 1690681 (-)
LOC113524053 NA coding upstream 61410 1726901 ~ 1729117 (-)
LOC113524064 NA coding upstream 101213 1766704 ~ 1768749 (-)
LOC117596405 NA coding upstream 143031 1808522 ~ 1809853 (-)
LOC117596466 NA coding upstream 156192 1821683 ~ 1823769 (-)
G398697 NA non-coding downstream 43714 1602236 ~ 1603986 (-)
G398686 NA non-coding downstream 68930 1566784 ~ 1578770 (-)
G398667 NA non-coding downstream 70322 1564459 ~ 1577378 (-)
G398679 LOC108272998 non-coding downstream 92760 1553627 ~ 1554940 (-)
G398665 NA non-coding downstream 162152 1484185 ~ 1485548 (-)
G398730 NA non-coding upstream 11697 1677188 ~ 1679682 (-)
G398732 NA non-coding upstream 25981 1691472 ~ 1691916 (-)
G398743 mpst,zgc:162544,LOC108273010,LOC105890773 non-coding upstream 49545 1715036 ~ 1716463 (-)
G398751 NA non-coding upstream 60629 1726120 ~ 1726528 (-)
LOC117596467 NA non-coding upstream 209708 1875199 ~ 1876420 (-)
st13 st13,f10a1 other downstream 55966 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 131386 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 185630 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 330064 1276278 ~ 1317636 (-)
fmc1 fmc1 other downstream 693500 951202 ~ 954200 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 64599 1730090 ~ 1881058 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 689418 2354909 ~ 2377631 (-)
G399028 NA other upstream 706805 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 1296222 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1351799 3017290 ~ 3295273 (-)

Expression


Co-expression Network