G398751


Basic Information

Item Value
gene id G398751
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1726120 ~ 1726528 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU473015
CCAGTTTAACACACAGCATCaatcacaacattaaaagtcatgttgtgtgtgtacctgtgcatACAAATGCAATGTCACTAGGTGTATCTGTTTACTgatccaaatatccatatccatatctgtattcagatgtaaacctgaagtgggtgtggcctaaatgagaggttttttctttctttgtttaattatatataaaacctacCACTCTGTCTCTGGAAACACTGTAAATCGGATGCAGACAAAACGGCTTCTGTAGCAGCAGCAAGAGAACGAATGCAAGGGGGATGACTCCAGATTACAGGGTCCAAATGCCTAGTAGGCCAAGGGGCGTTGTCTATCCCCATGTTGCTCTGTAAGAACTGATGACATAAATTCATTCTTCTCATGAACGTACCAGCAGAAAGGCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473015 True 409 lncRNA 0.41 1 1726120 1726528

Neighbor

gene id symbol gene type direction distance location
mief1 mief1 coding downstream 35439 1683598 ~ 1690681 (-)
cbx7a LOC108273000,LOC103373459 coding downstream 77073 1639569 ~ 1649047 (-)
LOC113524072 LOC108272977,LOC108279536,LOC108280069,LOC108261210 coding downstream 187447 1522507 ~ 1538673 (-)
LOC117596456 LOC108272977,LOC108279574,LOC108280069,LOC108261293,LOC108261210 coding downstream 279067 1419889 ~ 1447053 (-)
LOC113524067 LOC108272977,LOC108280066,LOC108261293,LOC108261210 coding downstream 318356 1392428 ~ 1407764 (-)
LOC113524053 NA coding upstream 373 1726901 ~ 1729117 (-)
LOC113524064 NA coding upstream 40176 1766704 ~ 1768749 (-)
LOC117596405 NA coding upstream 81994 1808522 ~ 1809853 (-)
LOC117596466 NA coding upstream 95155 1821683 ~ 1823769 (-)
LOC113524043 NA coding upstream 132354 1858882 ~ 1860957 (-)
G398743 mpst,zgc:162544,LOC108273010,LOC105890773 non-coding downstream 9657 1715036 ~ 1716463 (-)
G398732 NA non-coding downstream 34204 1691472 ~ 1691916 (-)
G398730 NA non-coding downstream 46438 1677188 ~ 1679682 (-)
G398718 NA non-coding downstream 60629 1647700 ~ 1665491 (-)
G398689 NA non-coding downstream 64883 1658750 ~ 1661237 (-)
LOC117596467 NA non-coding upstream 148671 1875199 ~ 1876420 (-)
G398922 NA non-coding upstream 225393 1951921 ~ 1952184 (-)
G398925 NA non-coding upstream 229518 1956046 ~ 1959562 (-)
G398942 NA non-coding upstream 271558 1998086 ~ 1998681 (-)
G398935 NA non-coding upstream 304640 2031168 ~ 2032632 (-)
st13 st13,f10a1 other downstream 134386 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 209806 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 264050 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 408484 1276278 ~ 1317636 (-)
fmc1 fmc1 other downstream 771920 951202 ~ 954200 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 3562 1730090 ~ 1881058 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 628381 2354909 ~ 2377631 (-)
G399028 NA other upstream 645768 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 1235185 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1290762 3017290 ~ 3295273 (-)

Expression


Co-expression Network