G398922


Basic Information

Item Value
gene id G398922
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1951921 ~ 1952184 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU473273
CAACATGCGACGCGTCTGAGACGGAGACCGTAAAgagtttgatttgtttgtttgtttgtttttaattaatgctCAGAACATTATACAGATAATAACAGATAAGAacaatgagaaataaaacaaaaccgatgaaaaaagagttttacagattaaaaactAACCGGAGAGCAGCTGTGTTAATGCAAGACCAAAAGGGCAGAACTACTCATTTACAGTTTATTGCTTCTGGGAAaggttttataaatataatatttaaaaaaagaa

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473273 True 264 lncRNA 0.32 1 1951921 1952184

Neighbor

gene id symbol gene type direction distance location
hspbp1 hspbp1,LOC107550267 coding downstream 825 1934506 ~ 1951096 (-)
LOC113524085 NA coding downstream 19795 1916290 ~ 1932126 (-)
LOC113524042 NA coding downstream 76884 1872919 ~ 1875037 (-)
LOC113524043 NA coding downstream 90964 1858882 ~ 1860957 (-)
LOC117596466 NA coding downstream 128152 1821683 ~ 1823769 (-)
LOC117596454 LOC108273013 coding upstream 10546 1962730 ~ 1970432 (-)
jmjd8 jmjd8 coding upstream 27074 1979258 ~ 1982556 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding upstream 51438 2003622 ~ 2007277 (-)
tmem220 tmem220 coding upstream 55822 2008006 ~ 2011992 (-)
tmem100a tmem100 coding upstream 445232 2397416 ~ 2402161 (-)
LOC117596467 NA non-coding downstream 75501 1875199 ~ 1876420 (-)
G398751 NA non-coding downstream 225393 1726120 ~ 1726528 (-)
G398743 mpst,zgc:162544,LOC108273010,LOC105890773 non-coding downstream 235458 1715036 ~ 1716463 (-)
G398732 NA non-coding downstream 260005 1691472 ~ 1691916 (-)
G398730 NA non-coding downstream 272239 1677188 ~ 1679682 (-)
G398925 NA non-coding upstream 3862 1956046 ~ 1959562 (-)
G398942 NA non-coding upstream 45902 1998086 ~ 1998681 (-)
G398935 NA non-coding upstream 78984 2031168 ~ 2032632 (-)
G398953 NA non-coding upstream 88117 2040301 ~ 2040923 (-)
trnad-guc_31 NA non-coding upstream 295976 2248160 ~ 2248231 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 70863 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 360187 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 435607 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 489851 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 634285 1276278 ~ 1317636 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 402725 2354909 ~ 2377631 (-)
G399028 NA other upstream 420112 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 1009529 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1065106 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 1195115 3147299 ~ 3196563 (-)

Expression


Co-expression Network