G398942


Basic Information

Item Value
gene id G398942
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1998086 ~ 1998681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU473294
gagggataAAGCAGGAGATTTGACCAGCTAATGCCGAAACCAGGAGGCGAGAAAACGATCACGAAATACAGTTTAATATTGAGGTGCGTTCACTAACCCAGTCATTTAAAGCAGAGGTGTGTTCACTAACCCAGTCGTTTAACACAGGGGTGTGTTCACTAACCCAGTCGTTTAACACTGAGGTGCGTTCACTAACCCAGTCATTTAAAGCAGAGGTGTGTTCACTAACCTAGTCATTTAAAGCAAAGGTGTGTTCACTAACCCAGTCGTTTAACACAGGGGTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473294 True 286 lncRNA 0.45 2 1998086 1998681

Neighbor

gene id symbol gene type direction distance location
jmjd8 jmjd8 coding downstream 15530 1979258 ~ 1982556 (-)
LOC117596454 LOC108273013 coding downstream 27654 1962730 ~ 1970432 (-)
hspbp1 hspbp1,LOC107550267 coding downstream 46990 1934506 ~ 1951096 (-)
LOC113524085 NA coding downstream 65960 1916290 ~ 1932126 (-)
LOC113524042 NA coding downstream 123049 1872919 ~ 1875037 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding upstream 4941 2003622 ~ 2007277 (-)
tmem220 tmem220 coding upstream 9325 2008006 ~ 2011992 (-)
tmem100a tmem100 coding upstream 398735 2397416 ~ 2402161 (-)
cbx2 cbx2 coding upstream 500298 2498979 ~ 2507141 (-)
LOC113523971 LOC108272994 coding upstream 519110 2517791 ~ 2524179 (-)
G398925 NA non-coding downstream 38524 1956046 ~ 1959562 (-)
G398922 NA non-coding downstream 45902 1951921 ~ 1952184 (-)
LOC117596467 NA non-coding downstream 121666 1875199 ~ 1876420 (-)
G398751 NA non-coding downstream 271558 1726120 ~ 1726528 (-)
G398743 mpst,zgc:162544,LOC108273010,LOC105890773 non-coding downstream 281623 1715036 ~ 1716463 (-)
G398935 NA non-coding upstream 32487 2031168 ~ 2032632 (-)
G398953 NA non-coding upstream 41620 2040301 ~ 2040923 (-)
trnad-guc_31 NA non-coding upstream 249479 2248160 ~ 2248231 (-)
G399016 LOC102218968 non-coding upstream 263923 2262604 ~ 2347812 (-)
G399054 hlf,LOC102226672,LOC103365050,LOC103481883,LOC107089311 non-coding upstream 345290 2343971 ~ 2345042 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 117028 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 406352 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 481772 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 536016 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 680450 1276278 ~ 1317636 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 356228 2354909 ~ 2377631 (-)
G399028 NA other upstream 373615 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 963032 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1018609 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 1148618 3147299 ~ 3196563 (-)

Expression


Co-expression Network